PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
5A_I16_VO_L_4_T_31933/214906|m.47892.mrna1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
5A_I16_VO_L_4_T_31933/214906|m.47892.mrna2 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
5A_all_VO_L_2_T_316048/409051|m.40025.mrna1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000000007-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000000573-RA Phenylpropanoid LAC low borderline LAC__00002__sp_O81081_LAC2_ARATH
PITA_000000819-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000000820-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000000862-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000001312-RA Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
PITA_000001536-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000001548-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000001549-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000001768-RA Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
PITA_000001774-RA Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
PITA_000002624-RA Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
PITA_000002625-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000002626-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000002627-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000003546-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000003551-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000004457-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000005997-RA Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
PITA_000007362-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000007583-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000007587-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000008476-RA Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
PITA_000009728-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000009730-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000010367-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000011139-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000012104-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000013211-RA Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
PITA_000013212-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000013496-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000014816-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000014818-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000014820-RA Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
PITA_000015837-RA Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
PITA_000016546-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000016549-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000016570-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000016656-RA Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
PITA_000016657-RA Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
PITA_000016775-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000017859-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000017937-RA Phenylpropanoid LAC low borderline LAC__00002__sp_O81081_LAC2_ARATH
PITA_000018180-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000018909-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000018912-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000019376-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH