PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
Reset
Gene Pathway Family Confidence Status Best Target
PITA_000020613-RA Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
PITA_000020903-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000021409-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000023836-RA Phenylpropanoid LAC low borderline LAC__00002__sp_O81081_LAC2_ARATH
PITA_000023837-RA Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
PITA_000025831-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000025832-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000026234-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000027640-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000027842-RA Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
PITA_000028863-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000029156-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000030129-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000030306-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000030307-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000030351-RA Phenylpropanoid LAC low borderline LAC__00002__sp_O81081_LAC2_ARATH
PITA_000030461-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000031859-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000032391-RA Phenylpropanoid LAC low borderline LAC__00003__sp_Q84J37_LAC15_ARATH
PITA_000032746-RA Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
PITA_000032748-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000033551-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000034469-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000034470-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000035022-RA Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
PITA_000037142-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000038151-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000038551-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000038552-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000039218-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000039219-RA Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
PITA_000039220-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000039335-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000039337-RA Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
PITA_000039724-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000040379-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000040969-RA Phenylpropanoid LAC low borderline LAC__00002__sp_O81081_LAC2_ARATH
PITA_000040976-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000041823-RA Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
PITA_000044734-RA Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
PITA_000045389-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000046336-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000046880-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000046881-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000048421-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000048572-RA Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
PITA_000049783-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000049859-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
PITA_000050649-RA Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
PITA_000050744-RA Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH