PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Current group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.92% Phenylpropanoid pathway 23.93% Alkaloid pathway 19.88% Flavonoid pathway 15.18% Rosmarinic acid pathway 7.75% Steroid pathway 5.34%
Family Distribution
C4H 5.65% C3'H/CYP98A 5.17% UGT 4.84% 4CL 4.56% CYP76 4.22% BAHD 4.21% POD 4.18% 7DLGT 3.84%
Other Families 63.32%
More Families (98)
UFGT 426 3.36% IFS 424 3.34% TPS 369 2.91% F3H 301 2.37% DWF4/CYP90B1 292 2.3% CAD 273 2.15% GES 258 2.03% F3'H/CYP75B 253 1.99% CAS 239 1.88% BR6OX2/CYP85A2 234 1.84% G8O/G8H 232 1.83% LAC 227 1.79% T3O 208 1.64% H6H 200 1.58% IFR 189 1.49% T16H 183 1.44% CODM/T6ODM 181 1.43% IO 156 1.23% NMT 151 1.19% F3'5'H/CYP75A 138 1.09% TRI/TRII 135 1.06% SGD 134 1.06% COMT 128 1.01% HCT 118 0.93% PAL 117 0.92% STR 98 0.77% SMT1/SMT2/SMT3 98 0.77% FNS 96 0.76% F5H/CYP84A 94 0.74% PYKS 92 0.72% 8HGO 89 0.7% 7DLH 89 0.7% RAS 85 0.67% GS 84 0.66% 16OMT 80 0.63% PMT 76 0.6% SLS 75 0.59% ANR 74 0.58% HMGR 74 0.58% ANS/LDOX 73 0.58% DFR 69 0.54% CYP90D1 69 0.54% CHS 67 0.53% CCR 64 0.5% LAMT 60 0.47% NCS 59 0.46% CSE 54 0.43% TAT 50 0.39% CPD/CYP90A1 47 0.37% GGPPS 43 0.34% BR6OX1/CYP85A1 41 0.32% CYP80B1 39 0.31% ISY 38 0.3% BBE 34 0.27% CYP71 31 0.24% XMT_MXMT_DXMT 28 0.22% ADC 26 0.2% ODC 24 0.19% CHI 24 0.19% FPPS 24 0.19% CYP719 23 0.18% COR 22 0.17% 6OMT_4OMT_SOMT 19 0.15% CCoAOMT 18 0.14% ROT3/CYP90C1 18 0.14% CNMT 17 0.13% MPO 15 0.12% FLS 15 0.12% DWF1 13 0.1% DET2 12 0.09% AACT 12 0.09% CYP51G1 10 0.08% CPR 9 0.07% HDS/IspG 9 0.07% IDI 9 0.07% MVK 8 0.06% HPPR 7 0.06% DWF5 7 0.06% CYP80F1 6 0.05% CMK/IspE 6 0.05% DXS 6 0.05% TDC 4 0.03% SQS/FDFT1 4 0.03% SQE 4 0.03% HYD1 3 0.02% CPI1 3 0.02% HDR/IspH 3 0.02% HMGS 3 0.02% MVD 3 0.02% FK 2 0.02% SMO1/SMO2 2 0.02% DWF7 2 0.02% DXR 2 0.02% PMK 2 0.02% MDS/IspF 2 0.02% TYDC_DDC 1 0.01% MCT/IspD 1 0.01% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
PITA_000041629-RA Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
PITA_000042595-RA Alkaloid NMT medium borderline NMT__00018__sp_I1M2U5_NAMT1_SOYBN
PITA_000042596-RA Alkaloid NMT medium pass NMT__00018__sp_I1M2U5_NAMT1_SOYBN
PITA_000042965-RA Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
PITA_000045258-RA Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
PITA_000045535-RA Alkaloid NMT medium borderline NMT__00058__sp_Q9FZN8_TCS1_CAMSI
PITA_000046988-RA Alkaloid NMT medium borderline NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB
PITA_000047057-RA Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
PITA_000047496-RA Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
PITA_000047599-RA Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
PITA_000049805-RA Alkaloid NMT medium pass NMT__00023__sp_O82210_ANM12_ARATH
PITA_000050784-RA Alkaloid NMT low borderline NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
PITA_000050943-RA Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
PITA_000051028-RA Alkaloid NMT low borderline NMT__00060__sp_Q9MAT5_ANM10_ARATH
PITA_000051380-RA Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
PITA_000051386-RA Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
PITA_000051627-RA Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
PITA_000051629-RA Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
PITA_000051635-RA Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
PITA_000051995-RA Alkaloid NMT low borderline NMT__00032__sp_Q5PP37_ATXR2_ARATH
PITA_000052027-RA Alkaloid NMT medium borderline NMT__00043__sp_Q8H0D2_DXMT1_COFAR
PITA_000052052-RA Alkaloid NMT low borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
PITA_000052937-RA Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
PITA_000053541-RA Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
PITA_000053642-RA Alkaloid NMT low borderline NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB
PITA_000054171-RA Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
PITA_000054355-RA Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
PITA_000054877-RA Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
PITA_000055072-RA Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
PITA_000055074-RA Alkaloid NMT medium borderline NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
PITA_000055356-RA Alkaloid NMT medium borderline NMT__00018__sp_I1M2U5_NAMT1_SOYBN
PITA_000055974-RA Alkaloid NMT medium borderline NMT__00018__sp_I1M2U5_NAMT1_SOYBN
PITA_000057882-RA Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
PITA_000058402-RA Alkaloid NMT medium borderline NMT__00001__sp_A0A075D654_ANMT_RAUSE
PITA_000059840-RA Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
PITA_000061005-RA Alkaloid NMT medium pass NMT__00018__sp_I1M2U5_NAMT1_SOYBN
PITA_000061116-RA Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
PITA_000061717-RA Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
PITA_000063594-RA Alkaloid NMT low borderline NMT__00060__sp_Q9MAT5_ANM10_ARATH
PITA_000063873-RA Alkaloid NMT medium borderline NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
PITA_000064262-RA Alkaloid NMT medium pass NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
PITA_000065462-RA Alkaloid NMT medium borderline NMT__00043__sp_Q8H0D2_DXMT1_COFAR
PITA_000065724-RA Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
PITA_000066191-RA Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
PITA_000066738-RA Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
PITA_000067060-RA Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
PITA_000067670-RA Alkaloid NMT low borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
PITA_000067719-RA Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
PITA_000068212-RA Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
PITA_000069000-RA Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH