PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
3A_I18_VO_L_2_T_128098/136250|m.33128.mrna1 Alkaloid PMT medium pass
PITA_000000833-RA Alkaloid PMT medium pass
PITA_000001006-RA Alkaloid PMT medium pass
PITA_000002175-RA Alkaloid PMT medium pass
PITA_000002181-RA Alkaloid PMT low borderline
PITA_000006323-RA Alkaloid PMT medium pass
PITA_000009151-RA Alkaloid PMT low borderline
PITA_000011445-RA Alkaloid PMT medium pass
PITA_000014170-RA Alkaloid PMT medium pass
PITA_000016979-RA Alkaloid PMT medium pass
PITA_000018662-RA Alkaloid PMT low borderline
PITA_000021157-RA Alkaloid PMT low borderline
PITA_000021328-RA Alkaloid PMT medium pass
PITA_000022625-RA Alkaloid PMT low borderline
PITA_000022967-RA Alkaloid PMT medium borderline
PITA_000023153-RA Alkaloid PMT medium pass
PITA_000023611-RA Alkaloid PMT medium pass
PITA_000025120-RA Alkaloid PMT medium pass
PITA_000025302-RA Alkaloid PMT medium pass
PITA_000025948-RA Alkaloid PMT low borderline
PITA_000026379-RA Alkaloid PMT low borderline
PITA_000026380-RA Alkaloid PMT medium pass
PITA_000026467-RA Alkaloid PMT medium pass
PITA_000028396-RA Alkaloid PMT low borderline
PITA_000029191-RA Alkaloid PMT medium pass
PITA_000029370-RA Alkaloid PMT low borderline
PITA_000029371-RA Alkaloid PMT medium pass
PITA_000030936-RA Alkaloid PMT low borderline
PITA_000031066-RA Alkaloid PMT medium pass
PITA_000031611-RA Alkaloid PMT medium pass
PITA_000032042-RA Alkaloid PMT medium pass
PITA_000032539-RA Alkaloid PMT medium pass
PITA_000035029-RA Alkaloid PMT low borderline
PITA_000037097-RA Alkaloid PMT medium borderline
PITA_000037786-RA Alkaloid PMT medium pass
PITA_000038868-RA Alkaloid PMT low borderline
PITA_000039466-RA Alkaloid PMT medium pass
PITA_000040473-RA Alkaloid PMT medium pass
PITA_000041718-RA Alkaloid PMT medium pass
PITA_000044091-RA Alkaloid PMT low borderline
PITA_000047171-RA Alkaloid PMT low borderline
PITA_000051190-RA Alkaloid PMT low borderline
PITA_000051832-RA Alkaloid PMT medium pass
PITA_000054665-RA Alkaloid PMT medium pass
PITA_000054744-RA Alkaloid PMT low borderline
PITA_000054908-RA Alkaloid PMT low borderline
PITA_000055409-RA Alkaloid PMT medium pass
PITA_000059153-RA Alkaloid PMT medium pass
PITA_000060600-RA Alkaloid PMT low borderline
PITA_000061450-RA Alkaloid PMT medium pass