Pinus taeda (pinus_taeda)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 27.92% Phenylpropanoid pathway 23.93% Alkaloid pathway 19.88% Flavonoid pathway 15.18% Rosmarinic acid pathway 7.75% Steroid pathway 5.34%

Family Distribution

5262 Candidate Genes

C4H 5.65% C3'H/CYP98A 5.17% UGT 4.84% 4CL 4.56% CYP76 4.22% BAHD 4.21% POD 4.18% 7DLGT 3.84%

Other Families 63.32%

More Families (98)

UFGT 426 3.36% IFS 424 3.34% TPS 369 2.91% F3H 301 2.37% DWF4/CYP90B1 292 2.3% CAD 273 2.15% GES 258 2.03% F3'H/CYP75B 253 1.99% CAS 239 1.88% BR6OX2/CYP85A2 234 1.84% G8O/G8H 232 1.83% LAC 227 1.79% T3O 208 1.64% H6H 200 1.58% IFR 189 1.49% T16H 183 1.44% CODM/T6ODM 181 1.43% IO 156 1.23% NMT 151 1.19% F3'5'H/CYP75A 138 1.09% TRI/TRII 135 1.06% SGD 134 1.06% COMT 128 1.01% HCT 118 0.93% PAL 117 0.92% STR 98 0.77% SMT1/SMT2/SMT3 98 0.77% FNS 96 0.76% F5H/CYP84A 94 0.74% PYKS 92 0.72% 8HGO 89 0.7% 7DLH 89 0.7% RAS 85 0.67% GS 84 0.66% 16OMT 80 0.63% PMT 76 0.6% SLS 75 0.59% ANR 74 0.58% HMGR 74 0.58% ANS/LDOX 73 0.58% DFR 69 0.54% CYP90D1 69 0.54% CHS 67 0.53% CCR 64 0.5% LAMT 60 0.47% NCS 59 0.46% CSE 54 0.43% TAT 50 0.39% CPD/CYP90A1 47 0.37% GGPPS 43 0.34% BR6OX1/CYP85A1 41 0.32% CYP80B1 39 0.31% ISY 38 0.3% BBE 34 0.27% CYP71 31 0.24% XMT_MXMT_DXMT 28 0.22% ADC 26 0.2% ODC 24 0.19% CHI 24 0.19% FPPS 24 0.19% CYP719 23 0.18% COR 22 0.17% 6OMT_4OMT_SOMT 19 0.15% CCoAOMT 18 0.14% ROT3/CYP90C1 18 0.14% CNMT 17 0.13% MPO 15 0.12% FLS 15 0.12% DWF1 13 0.1% DET2 12 0.09% AACT 12 0.09% CYP51G1 10 0.08% CPR 9 0.07% HDS/IspG 9 0.07% IDI 9 0.07% MVK 8 0.06% HPPR 7 0.06% DWF5 7 0.06% CYP80F1 6 0.05% CMK/IspE 6 0.05% DXS 6 0.05% TDC 4 0.03% SQS/FDFT1 4 0.03% SQE 4 0.03% HYD1 3 0.02% CPI1 3 0.02% HDR/IspH 3 0.02% HMGS 3 0.02% MVD 3 0.02% FK 2 0.02% SMO1/SMO2 2 0.02% DWF7 2 0.02% DXR 2 0.02% PMK 2 0.02% MDS/IspF 2 0.02% TYDC_DDC 1 0.01% MCT/IspD 1 0.01% GPPS 1 0.01%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	1469	18	UGT (484)	View species results
Phenylpropanoid pathway	1259	13	POD (460)	View species results
Alkaloid pathway	1046	30	7DLGT (246)	View species results
Flavonoid pathway	799	16	UFGT (341)	View species results
Rosmarinic acid pathway	408	7	4CL (161)	View species results
Steroid pathway	281	16	CAS (195)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	4571	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	737	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: POD

Gene	Pathway	Family	Confidence	Status	Best Target
PITA_000033632-RA	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
PITA_000033934-RA	Phenylpropanoid	POD	medium	pass	POD__00002__sp_A5H8G4_PER1_MAIZE
PITA_000033936-RA	Phenylpropanoid	POD	low	borderline	POD__00027__sp_Q9XIV8_PERN1_TOBAC
PITA_000034238-RA	Phenylpropanoid	POD	medium	pass	POD__00021__sp_Q9LEH3_PER15_IPOBA
PITA_000034435-RA	Phenylpropanoid	POD	medium	pass	POD__00013__sp_Q4W1I8_PER1_ZINEL
PITA_000034851-RA	Phenylpropanoid	POD	medium	pass	POD__00002__sp_A5H8G4_PER1_MAIZE
PITA_000035408-RA	Phenylpropanoid	POD	medium	pass	POD__00028__sp_Q9ZVD5_AGO4_ARATH
PITA_000035435-RA	Phenylpropanoid	POD	medium	pass	POD__00008__sp_P52574_REHY_SYNRU
PITA_000035849-RA	Phenylpropanoid	POD	low	borderline	POD__00001__sp_A5H452_PER70_MAIZE
PITA_000036629-RA	Phenylpropanoid	POD	medium	pass	POD__00002__sp_A5H8G4_PER1_MAIZE
PITA_000037879-RA	Phenylpropanoid	POD	medium	pass	POD__00003__sp_A9PCL4_PRX2_POPTR
PITA_000038064-RA	Phenylpropanoid	POD	medium	pass	POD__00021__sp_Q9LEH3_PER15_IPOBA
PITA_000038105-RA	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
PITA_000038473-RA	Phenylpropanoid	POD	medium	pass	POD__00011__sp_Q05431_APX1_ARATH
PITA_000038581-RA	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
PITA_000038589-RA	Phenylpropanoid	POD	medium	pass	POD__00028__sp_Q9ZVD5_AGO4_ARATH
PITA_000038927-RA	Phenylpropanoid	POD	medium	pass	POD__00010__sp_P84516_PER1_SORBI
PITA_000039183-RA	Phenylpropanoid	POD	medium	pass	POD__00002__sp_A5H8G4_PER1_MAIZE
PITA_000039341-RA	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
PITA_000039750-RA	Phenylpropanoid	POD	low	borderline	POD__00001__sp_A5H452_PER70_MAIZE
PITA_000039906-RA	Phenylpropanoid	POD	medium	pass	POD__00010__sp_P84516_PER1_SORBI
PITA_000039978-RA	Phenylpropanoid	POD	medium	pass	POD__00004__sp_O04005_REHY_ARATH
PITA_000040372-RA	Phenylpropanoid	POD	medium	pass	POD__00010__sp_P84516_PER1_SORBI
PITA_000040576-RA	Phenylpropanoid	POD	medium	pass	POD__00001__sp_A5H452_PER70_MAIZE
PITA_000040773-RA	Phenylpropanoid	POD	medium	pass	POD__00001__sp_A5H452_PER70_MAIZE
PITA_000041255-RA	Phenylpropanoid	POD	medium	pass	POD__00001__sp_A5H452_PER70_MAIZE
PITA_000041408-RA	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
PITA_000041532-RA	Phenylpropanoid	POD	medium	pass	POD__00021__sp_Q9LEH3_PER15_IPOBA
PITA_000041669-RA	Phenylpropanoid	POD	medium	pass	POD__00001__sp_A5H452_PER70_MAIZE
PITA_000041938-RA	Phenylpropanoid	POD	medium	pass	POD__00010__sp_P84516_PER1_SORBI
PITA_000041984-RA	Phenylpropanoid	POD	medium	borderline	POD__00010__sp_P84516_PER1_SORBI
PITA_000042037-RA	Phenylpropanoid	POD	medium	pass	POD__00002__sp_A5H8G4_PER1_MAIZE
PITA_000042039-RA	Phenylpropanoid	POD	low	borderline	POD__00001__sp_A5H452_PER70_MAIZE
PITA_000042040-RA	Phenylpropanoid	POD	low	borderline	POD__00001__sp_A5H452_PER70_MAIZE
PITA_000042081-RA	Phenylpropanoid	POD	low	borderline	POD__00013__sp_Q4W1I8_PER1_ZINEL
PITA_000042443-RA	Phenylpropanoid	POD	medium	pass	POD__00026__sp_Q9XEX2_PRX2B_ARATH
PITA_000042489-RA	Phenylpropanoid	POD	medium	pass	POD__00002__sp_A5H8G4_PER1_MAIZE
PITA_000042561-RA	Phenylpropanoid	POD	medium	pass	POD__00019__sp_Q949Y3_PPA26_ARATH
PITA_000042562-RA	Phenylpropanoid	POD	medium	pass	POD__00019__sp_Q949Y3_PPA26_ARATH
PITA_000042997-RA	Phenylpropanoid	POD	low	borderline	POD__00028__sp_Q9ZVD5_AGO4_ARATH
PITA_000043254-RA	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
PITA_000043317-RA	Phenylpropanoid	POD	medium	pass	POD__00028__sp_Q9ZVD5_AGO4_ARATH
PITA_000043478-RA	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
PITA_000043561-RA	Phenylpropanoid	POD	low	borderline	POD__00010__sp_P84516_PER1_SORBI
PITA_000044036-RA	Phenylpropanoid	POD	medium	pass	POD__00001__sp_A5H452_PER70_MAIZE
PITA_000044037-RA	Phenylpropanoid	POD	medium	pass	POD__00001__sp_A5H452_PER70_MAIZE
PITA_000044213-RA	Phenylpropanoid	POD	medium	pass	POD__00021__sp_Q9LEH3_PER15_IPOBA
PITA_000044479-RA	Phenylpropanoid	POD	medium	pass	POD__00019__sp_Q949Y3_PPA26_ARATH
PITA_000045145-RA	Phenylpropanoid	POD	medium	pass	POD__00002__sp_A5H8G4_PER1_MAIZE
PITA_000045279-RA	Phenylpropanoid	POD	medium	pass	POD__00010__sp_P84516_PER1_SORBI