PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: RAS
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Gene Pathway Family Confidence Status
2A_all_NT_comp86965_c0_seq1|m.13007.mrna1 Rosmarinic Acid RAS medium pass
3A_I18_VO_L_2_T_128098/136250|m.33128.mrna1 Rosmarinic Acid RAS medium pass
PITA_000000833-RA Rosmarinic Acid RAS medium pass
PITA_000000950-RA Rosmarinic Acid RAS medium pass
PITA_000001636-RA Rosmarinic Acid RAS low borderline
PITA_000002175-RA Rosmarinic Acid RAS medium pass
PITA_000002181-RA Rosmarinic Acid RAS low borderline
PITA_000009151-RA Rosmarinic Acid RAS medium pass
PITA_000009533-RA Rosmarinic Acid RAS medium pass
PITA_000011445-RA Rosmarinic Acid RAS medium pass
PITA_000014608-RA Rosmarinic Acid RAS low borderline
PITA_000014609-RA Rosmarinic Acid RAS low borderline
PITA_000021157-RA Rosmarinic Acid RAS medium pass
PITA_000022739-RA Rosmarinic Acid RAS low borderline
PITA_000023110-RA Rosmarinic Acid RAS low borderline
PITA_000023153-RA Rosmarinic Acid RAS medium pass
PITA_000025302-RA Rosmarinic Acid RAS medium pass
PITA_000025947-RA Rosmarinic Acid RAS medium pass
PITA_000025948-RA Rosmarinic Acid RAS medium pass
PITA_000026379-RA Rosmarinic Acid RAS medium pass
PITA_000026467-RA Rosmarinic Acid RAS medium pass
PITA_000028396-RA Rosmarinic Acid RAS low borderline
PITA_000028397-RA Rosmarinic Acid RAS low borderline
PITA_000028422-RA Rosmarinic Acid RAS low borderline
PITA_000029371-RA Rosmarinic Acid RAS medium pass
PITA_000030323-RA Rosmarinic Acid RAS low borderline
PITA_000030936-RA Rosmarinic Acid RAS medium pass
PITA_000031066-RA Rosmarinic Acid RAS medium pass
PITA_000031611-RA Rosmarinic Acid RAS medium pass
PITA_000032042-RA Rosmarinic Acid RAS medium pass
PITA_000034070-RA Rosmarinic Acid RAS medium pass
PITA_000034775-RA Rosmarinic Acid RAS low borderline
PITA_000035028-RA Rosmarinic Acid RAS medium pass
PITA_000035029-RA Rosmarinic Acid RAS low borderline
PITA_000036450-RA Rosmarinic Acid RAS medium pass
PITA_000037786-RA Rosmarinic Acid RAS medium pass
PITA_000038868-RA Rosmarinic Acid RAS medium pass
PITA_000038998-RA Rosmarinic Acid RAS low borderline
PITA_000039466-RA Rosmarinic Acid RAS medium pass
PITA_000040182-RA Rosmarinic Acid RAS low borderline
PITA_000040254-RA Rosmarinic Acid RAS medium pass
PITA_000042797-RA Rosmarinic Acid RAS medium pass
PITA_000044091-RA Rosmarinic Acid RAS low borderline
PITA_000044888-RA Rosmarinic Acid RAS low borderline
PITA_000045042-RA Rosmarinic Acid RAS medium pass
PITA_000045833-RA Rosmarinic Acid RAS medium pass
PITA_000046003-RA Rosmarinic Acid RAS low borderline
PITA_000046905-RA Rosmarinic Acid RAS low borderline
PITA_000047399-RA Rosmarinic Acid RAS low borderline
PITA_000048844-RA Rosmarinic Acid RAS medium pass