PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
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Gene Pathway Family Confidence Status
3A_I20_VO_L_2919_T_74/84|m.37143.mrna1 Alkaloid SGD medium pass
3A_I20_VO_L_2919_T_74/84|m.37143.mrna2 Alkaloid SGD medium pass
3A_I20_VO_L_2919_T_74/84|m.37143.mrna3 Alkaloid SGD medium pass
PITA_000000089-RA Alkaloid SGD medium pass
PITA_000000401-RA Alkaloid SGD medium pass
PITA_000003189-RA Alkaloid SGD medium pass
PITA_000004697-RA Alkaloid SGD medium pass
PITA_000007051-RA Alkaloid SGD medium pass
PITA_000007555-RA Alkaloid SGD low borderline
PITA_000010030-RA Alkaloid SGD low borderline
PITA_000010765-RA Alkaloid SGD medium pass
PITA_000012584-RA Alkaloid SGD medium pass
PITA_000012585-RA Alkaloid SGD medium pass
PITA_000017653-RA Alkaloid SGD medium pass
PITA_000020647-RA Alkaloid SGD medium pass
PITA_000020650-RA Alkaloid SGD low borderline
PITA_000021854-RA Alkaloid SGD medium pass
PITA_000022730-RA Alkaloid SGD medium pass
PITA_000022731-RA Alkaloid SGD medium pass
PITA_000023855-RA Alkaloid SGD medium pass
PITA_000024144-RA Alkaloid SGD medium pass
PITA_000024222-RA Alkaloid SGD medium pass
PITA_000025204-RA Alkaloid SGD low borderline
PITA_000026611-RA Alkaloid SGD medium pass
PITA_000026704-RA Alkaloid SGD medium pass
PITA_000027753-RA Alkaloid SGD low borderline
PITA_000027754-RA Alkaloid SGD low borderline
PITA_000028065-RA Alkaloid SGD medium pass
PITA_000029139-RA Alkaloid SGD medium pass
PITA_000029426-RA Alkaloid SGD medium pass
PITA_000029639-RA Alkaloid SGD medium pass
PITA_000029728-RA Alkaloid SGD low borderline
PITA_000030343-RA Alkaloid SGD medium pass
PITA_000030707-RA Alkaloid SGD low borderline
PITA_000031443-RA Alkaloid SGD low borderline
PITA_000032347-RA Alkaloid SGD medium pass
PITA_000032415-RA Alkaloid SGD medium pass
PITA_000033147-RA Alkaloid SGD medium pass
PITA_000033148-RA Alkaloid SGD medium pass
PITA_000033149-RA Alkaloid SGD low borderline
PITA_000034662-RA Alkaloid SGD medium pass
PITA_000036151-RA Alkaloid SGD medium pass
PITA_000037204-RA Alkaloid SGD low borderline
PITA_000037222-RA Alkaloid SGD low borderline
PITA_000039203-RA Alkaloid SGD low borderline
PITA_000039204-RA Alkaloid SGD low borderline
PITA_000040874-RA Alkaloid SGD medium pass
PITA_000041263-RA Alkaloid SGD medium pass
PITA_000041268-RA Alkaloid SGD low borderline
PITA_000041269-RA Alkaloid SGD low borderline