PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SLS
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Gene Pathway Family Confidence Status
5A_all_NT_comp98714_c0_seq3|m.38113.mrna1 Alkaloid SLS medium borderline
PITA_000000394-RA Alkaloid SLS low borderline
PITA_000002319-RA Alkaloid SLS low borderline
PITA_000006102-RA Alkaloid SLS medium borderline
PITA_000007289-RA Alkaloid SLS medium borderline
PITA_000007888-RA Alkaloid SLS medium borderline
PITA_000008973-RA Alkaloid SLS medium borderline
PITA_000011385-RA Alkaloid SLS low borderline
PITA_000011474-RA Alkaloid SLS low borderline
PITA_000014468-RA Alkaloid SLS low borderline
PITA_000015102-RA Alkaloid SLS medium borderline
PITA_000015103-RA Alkaloid SLS medium borderline
PITA_000019798-RA Alkaloid SLS medium borderline
PITA_000021078-RA Alkaloid SLS medium borderline
PITA_000021537-RA Alkaloid SLS low borderline
PITA_000021926-RA Alkaloid SLS medium borderline
PITA_000022164-RA Alkaloid SLS medium borderline
PITA_000023229-RA Alkaloid SLS medium borderline
PITA_000023424-RA Alkaloid SLS medium borderline
PITA_000025222-RA Alkaloid SLS medium borderline
PITA_000025224-RA Alkaloid SLS medium borderline
PITA_000029439-RA Alkaloid SLS medium borderline
PITA_000029980-RA Alkaloid SLS medium borderline
PITA_000029981-RA Alkaloid SLS medium pass
PITA_000030629-RA Alkaloid SLS medium borderline
PITA_000032240-RA Alkaloid SLS medium borderline
PITA_000033873-RA Alkaloid SLS medium borderline
PITA_000033942-RA Alkaloid SLS low borderline
PITA_000035326-RA Alkaloid SLS medium borderline
PITA_000036023-RA Alkaloid SLS medium borderline
PITA_000036203-RA Alkaloid SLS medium borderline
PITA_000036880-RA Alkaloid SLS low borderline
PITA_000037899-RA Alkaloid SLS medium borderline
PITA_000038318-RA Alkaloid SLS medium borderline
PITA_000038319-RA Alkaloid SLS medium borderline
PITA_000041624-RA Alkaloid SLS medium borderline
PITA_000044373-RA Alkaloid SLS medium borderline
PITA_000046984-RA Alkaloid SLS medium borderline
PITA_000047329-RA Alkaloid SLS medium borderline
PITA_000051928-RA Alkaloid SLS low borderline
PITA_000051929-RA Alkaloid SLS low borderline
PITA_000057353-RA Alkaloid SLS medium borderline
PITA_000057497-RA Alkaloid SLS medium borderline
PITA_000057544-RA Alkaloid SLS low borderline
PITA_000058227-RA Alkaloid SLS low borderline
PITA_000060916-RA Alkaloid SLS medium borderline
PITA_000062296-RA Alkaloid SLS medium pass
PITA_000062453-RA Alkaloid SLS medium borderline
PITA_000064853-RA Alkaloid SLS medium borderline
PITA_000065148-RA Alkaloid SLS medium borderline