PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
3A_I18_VO_L_2_T_92301/136250|m.32841.mrna1 Alkaloid T16H medium borderline
5A_all_VO_L_2_T_296355/409051|m.39907.mrna1 Alkaloid T16H medium borderline
PITA_000000462-RA Alkaloid T16H medium borderline
PITA_000000609-RA Alkaloid T16H medium borderline
PITA_000000727-RA Alkaloid T16H medium pass
PITA_000000734-RA Alkaloid T16H medium borderline
PITA_000000899-RA Alkaloid T16H medium borderline
PITA_000000975-RA Alkaloid T16H medium borderline
PITA_000001011-RA Alkaloid T16H low borderline
PITA_000002570-RA Alkaloid T16H medium borderline
PITA_000002872-RA Alkaloid T16H medium borderline
PITA_000004869-RA Alkaloid T16H medium borderline
PITA_000004872-RA Alkaloid T16H medium borderline
PITA_000005612-RA Alkaloid T16H medium borderline
PITA_000006776-RA Alkaloid T16H medium borderline
PITA_000007063-RA Alkaloid T16H low borderline
PITA_000007756-RA Alkaloid T16H medium borderline
PITA_000007978-RA Alkaloid T16H high pass
PITA_000008695-RA Alkaloid T16H medium borderline
PITA_000010256-RA Alkaloid T16H medium borderline
PITA_000010257-RA Alkaloid T16H medium pass
PITA_000011482-RA Alkaloid T16H medium borderline
PITA_000013707-RA Alkaloid T16H medium borderline
PITA_000014937-RA Alkaloid T16H medium borderline
PITA_000016127-RA Alkaloid T16H low borderline
PITA_000019693-RA Alkaloid T16H medium borderline
PITA_000020245-RA Alkaloid T16H medium borderline
PITA_000022231-RA Alkaloid T16H medium borderline
PITA_000022232-RA Alkaloid T16H medium borderline
PITA_000022455-RA Alkaloid T16H medium borderline
PITA_000022456-RA Alkaloid T16H medium borderline
PITA_000023051-RA Alkaloid T16H medium borderline
PITA_000023808-RA Alkaloid T16H medium borderline
PITA_000025412-RA Alkaloid T16H medium borderline
PITA_000025817-RA Alkaloid T16H medium borderline
PITA_000027540-RA Alkaloid T16H medium borderline
PITA_000027819-RA Alkaloid T16H medium borderline
PITA_000028489-RA Alkaloid T16H medium borderline
PITA_000030717-RA Alkaloid T16H medium borderline
PITA_000030719-RA Alkaloid T16H medium borderline
PITA_000030991-RA Alkaloid T16H medium borderline
PITA_000031065-RA Alkaloid T16H low borderline
PITA_000031099-RA Alkaloid T16H low borderline
PITA_000032176-RA Alkaloid T16H medium borderline
PITA_000032651-RA Alkaloid T16H low borderline
PITA_000033586-RA Alkaloid T16H medium borderline
PITA_000033627-RA Alkaloid T16H medium borderline
PITA_000034815-RA Alkaloid T16H medium borderline
PITA_000035695-RA Alkaloid T16H medium borderline
PITA_000036127-RA Alkaloid T16H medium borderline