PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
1A_all_VO_L_799_T_709/713|m.1521.mrna1 Alkaloid T3O medium borderline
2A_I13_NT_comp39368_c0_seq8|m.19043.mrna1 Alkaloid T3O medium borderline
2A_I15_VO_L_3412_T_2/3|m.22314.mrna1 Alkaloid T3O medium borderline
2A_all_VO_L_20057_T_11/12|m.16808.mrna1 Alkaloid T3O medium borderline
3A_I16_NT_comp35193_c0_seq7|m.30475.mrna2 Alkaloid T3O medium borderline
5A_I15_VO_L_2583_T_52/67|m.47001.mrna1 Alkaloid T3O medium borderline
6A_I20_VO_L_989_T_15/28|m.55970.mrna1 Alkaloid T3O medium borderline
PITA_000000196-RA Alkaloid T3O medium pass
PITA_000000303-RA Alkaloid T3O low borderline
PITA_000002642-RA Alkaloid T3O medium pass
PITA_000006647-RA Alkaloid T3O low borderline
PITA_000006872-RA Alkaloid T3O low borderline
PITA_000006873-RA Alkaloid T3O low borderline
PITA_000006874-RA Alkaloid T3O low borderline
PITA_000007203-RA Alkaloid T3O low borderline
PITA_000007874-RA Alkaloid T3O low borderline
PITA_000008681-RA Alkaloid T3O medium borderline
PITA_000010136-RA Alkaloid T3O medium borderline
PITA_000010264-RA Alkaloid T3O medium borderline
PITA_000010409-RA Alkaloid T3O medium borderline
PITA_000010799-RA Alkaloid T3O low borderline
PITA_000010839-RA Alkaloid T3O medium borderline
PITA_000010840-RA Alkaloid T3O medium borderline
PITA_000011056-RA Alkaloid T3O medium pass
PITA_000011084-RA Alkaloid T3O medium pass
PITA_000011816-RA Alkaloid T3O low borderline
PITA_000011912-RA Alkaloid T3O low borderline
PITA_000011915-RA Alkaloid T3O low borderline
PITA_000012112-RA Alkaloid T3O medium borderline
PITA_000015650-RA Alkaloid T3O medium borderline
PITA_000015914-RA Alkaloid T3O low borderline
PITA_000015915-RA Alkaloid T3O low borderline
PITA_000015916-RA Alkaloid T3O low borderline
PITA_000016546-RA Alkaloid T3O low borderline
PITA_000017562-RA Alkaloid T3O medium pass
PITA_000019010-RA Alkaloid T3O medium borderline
PITA_000020566-RA Alkaloid T3O low borderline
PITA_000020568-RA Alkaloid T3O medium pass
PITA_000021158-RA Alkaloid T3O low borderline
PITA_000023499-RA Alkaloid T3O medium borderline
PITA_000023806-RA Alkaloid T3O medium borderline
PITA_000024090-RA Alkaloid T3O medium borderline
PITA_000024091-RA Alkaloid T3O medium borderline
PITA_000024284-RA Alkaloid T3O low borderline
PITA_000024813-RA Alkaloid T3O medium borderline
PITA_000025076-RA Alkaloid T3O medium pass
PITA_000025413-RA Alkaloid T3O low borderline
PITA_000025722-RA Alkaloid T3O medium borderline
PITA_000026028-RA Alkaloid T3O medium pass
PITA_000026745-RA Alkaloid T3O low borderline