PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
PITA_000054771-RA Alkaloid T3O low borderline
PITA_000054791-RA Alkaloid T3O low borderline
PITA_000055498-RA Alkaloid T3O low borderline
PITA_000055794-RA Alkaloid T3O low borderline
PITA_000057114-RA Alkaloid T3O low borderline
PITA_000057798-RA Alkaloid T3O medium borderline
PITA_000058072-RA Alkaloid T3O medium pass
PITA_000058201-RA Alkaloid T3O low borderline
PITA_000058385-RA Alkaloid T3O medium borderline
PITA_000058398-RA Alkaloid T3O low borderline
PITA_000058968-RA Alkaloid T3O low borderline
PITA_000059173-RA Alkaloid T3O low borderline
PITA_000059378-RA Alkaloid T3O low borderline
PITA_000059406-RA Alkaloid T3O low borderline
PITA_000059899-RA Alkaloid T3O medium pass
PITA_000060684-RA Alkaloid T3O medium borderline
PITA_000061339-RA Alkaloid T3O low borderline
PITA_000061779-RA Alkaloid T3O medium borderline
PITA_000061881-RA Alkaloid T3O medium pass
PITA_000062146-RA Alkaloid T3O medium borderline
PITA_000063232-RA Alkaloid T3O medium borderline
PITA_000063500-RA Alkaloid T3O low borderline
PITA_000063628-RA Alkaloid T3O medium pass
PITA_000063702-RA Alkaloid T3O medium borderline
PITA_000063779-RA Alkaloid T3O medium pass
PITA_000064056-RA Alkaloid T3O low borderline
PITA_000064329-RA Alkaloid T3O medium borderline
PITA_000064624-RA Alkaloid T3O low borderline
PITA_000064653-RA Alkaloid T3O medium pass
PITA_000065244-RA Alkaloid T3O low borderline
PITA_000065262-RA Alkaloid T3O low borderline
PITA_000065346-RA Alkaloid T3O low borderline
PITA_000065515-RA Alkaloid T3O low borderline
PITA_000065529-RA Alkaloid T3O low borderline
PITA_000065837-RA Alkaloid T3O low borderline
PITA_000067031-RA Alkaloid T3O low borderline
PITA_000067444-RA Alkaloid T3O low borderline
PITA_000068976-RA Alkaloid T3O low borderline
PITA_000069009-RA Alkaloid T3O medium borderline
PITA_000069200-RA Alkaloid T3O medium borderline
PITA_000069443-RA Alkaloid T3O medium pass
PITA_000069860-RA Alkaloid T3O low borderline
PITA_000069902-RA Alkaloid T3O low borderline
PITA_000070258-RA Alkaloid T3O medium borderline
PITA_000070750-RA Alkaloid T3O low borderline
PITA_000071999-RA Alkaloid T3O low borderline
PITA_000072463-RA Alkaloid T3O medium borderline
PITA_000072957-RA Alkaloid T3O low borderline
PITA_000073980-RA Alkaloid T3O low borderline
PITA_000074526-RA Alkaloid T3O low borderline