PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
PITA_000032175-RA Terpenoid TPS low borderline TPS__00183__sp_R9QMW2_RAPN1_PINCO
PITA_000032443-RA Terpenoid TPS medium pass TPS__00177__sp_R9QMR1_RAPN1_PINBN
PITA_000032659-RA Terpenoid TPS medium pass TPS__00068__sp_C0PPM5_ALGPS_PICSI
PITA_000032660-RA Terpenoid TPS medium pass TPS__00102__sp_F2XFA0_TPSLS_PICXS
PITA_000032680-RA Terpenoid TPS medium pass TPS__00102__sp_F2XFA0_TPSLS_PICXS
PITA_000033455-RA Terpenoid TPS medium pass TPS__00142__sp_M4HXW5_MISO1_PINBN
PITA_000033786-RA Terpenoid TPS medium pass TPS__00142__sp_M4HXW5_MISO1_PINBN
PITA_000033787-RA Terpenoid TPS medium pass TPS__00142__sp_M4HXW5_MISO1_PINBN
PITA_000033788-RA Terpenoid TPS medium pass TPS__00142__sp_M4HXW5_MISO1_PINBN
PITA_000034700-RA Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
PITA_000034701-RA Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
PITA_000034702-RA Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
PITA_000034703-RA Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
PITA_000035063-RA Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
PITA_000035369-RA Terpenoid TPS medium pass TPS__00161__sp_Q675L0_TPSLS_PICAB
PITA_000036626-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000037121-RA Terpenoid TPS low borderline TPS__00152__sp_Q20HU7_LIMNS_PICSI
PITA_000037122-RA Terpenoid TPS medium pass TPS__00102__sp_F2XFA0_TPSLS_PICXS
PITA_000037124-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000037125-RA Terpenoid TPS low borderline TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000037126-RA Terpenoid TPS medium pass TPS__00102__sp_F2XFA0_TPSLS_PICXS
PITA_000037244-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000037544-RA Terpenoid TPS medium pass TPS__00101__sp_F2XF99_FARNS_PICXS
PITA_000037892-RA Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
PITA_000038511-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000038681-RA Terpenoid TPS medium pass TPS__00178__sp_R9QMR3_SAPN1_PINCO
PITA_000040030-RA Terpenoid TPS medium pass TPS__00101__sp_F2XF99_FARNS_PICXS
PITA_000040151-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000040152-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000040153-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000041743-RA Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
PITA_000042453-RA Terpenoid TPS low borderline TPS__00177__sp_R9QMR1_RAPN1_PINBN
PITA_000044974-RA Terpenoid TPS medium pass TPS__00144__sp_M4HY08_MPIM1_PINBN
PITA_000045132-RA Terpenoid TPS medium pass TPS__00014__sp_A0A1L6Z3A0_TPS8_PSEAD
PITA_000045133-RA Terpenoid TPS medium pass TPS__00014__sp_A0A1L6Z3A0_TPS8_PSEAD
PITA_000045134-RA Terpenoid TPS medium pass TPS__00014__sp_A0A1L6Z3A0_TPS8_PSEAD
PITA_000045205-RA Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
PITA_000045618-RA Terpenoid TPS medium pass TPS__00101__sp_F2XF99_FARNS_PICXS
PITA_000045870-RA Terpenoid TPS medium pass TPS__00180__sp_R9QMR5_ATERP_PINBN
PITA_000045871-RA Terpenoid TPS medium pass TPS__00191__sp_R9QMZ0_ATERP_PINCO
PITA_000046231-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000046233-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000046285-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000046432-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000046556-RA Terpenoid TPS medium pass TPS__00142__sp_M4HXW5_MISO1_PINBN
PITA_000046557-RA Terpenoid TPS medium pass TPS__00142__sp_M4HXW5_MISO1_PINBN
PITA_000046829-RA Terpenoid TPS medium pass TPS__00102__sp_F2XFA0_TPSLS_PICXS
PITA_000046831-RA Terpenoid TPS medium pass TPS__00102__sp_F2XFA0_TPSLS_PICXS
PITA_000048496-RA Terpenoid TPS medium pass TPS__00146__sp_M4HYC8_MPIM1_PINCO
PITA_000049385-RA Terpenoid TPS medium pass TPS__00069__sp_C0PPR1_LLOS2_PICSI