PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
PITA_000049386-RA Terpenoid TPS low borderline TPS__00069__sp_C0PPR1_LLOS2_PICSI
PITA_000049622-RA Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
PITA_000050354-RA Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
PITA_000051547-RA Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
PITA_000051560-RA Terpenoid TPS medium pass TPS__00177__sp_R9QMR1_RAPN1_PINBN
PITA_000051607-RA Terpenoid TPS medium pass TPS__00092__sp_F1CKI9_3CAR3_PICSI
PITA_000051608-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000051609-RA Terpenoid TPS medium pass TPS__00068__sp_C0PPM5_ALGPS_PICSI
PITA_000052037-RA Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
PITA_000052332-RA Terpenoid TPS medium pass TPS__00069__sp_C0PPR1_LLOS2_PICSI
PITA_000052333-RA Terpenoid TPS medium pass TPS__00107__sp_F2XFA6_LLOS1_PICSI
PITA_000052334-RA Terpenoid TPS medium pass TPS__00107__sp_F2XFA6_LLOS1_PICSI
PITA_000052353-RA Terpenoid TPS low borderline TPS__00101__sp_F2XF99_FARNS_PICXS
PITA_000052354-RA Terpenoid TPS low borderline TPS__00101__sp_F2XF99_FARNS_PICXS
PITA_000053187-RA Terpenoid TPS medium pass TPS__00094__sp_F2XF92_ISOPS_PICSI
PITA_000053256-RA Terpenoid TPS medium pass TPS__00068__sp_C0PPM5_ALGPS_PICSI
PITA_000053280-RA Terpenoid TPS medium pass TPS__00183__sp_R9QMW2_RAPN1_PINCO
PITA_000053701-RA Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
PITA_000053802-RA Terpenoid TPS medium pass TPS__00191__sp_R9QMZ0_ATERP_PINCO
PITA_000053803-RA Terpenoid TPS medium pass TPS__00191__sp_R9QMZ0_ATERP_PINCO
PITA_000053860-RA Terpenoid TPS medium pass TPS__00177__sp_R9QMR1_RAPN1_PINBN
PITA_000053861-RA Terpenoid TPS medium pass TPS__00183__sp_R9QMW2_RAPN1_PINCO
PITA_000054694-RA Terpenoid TPS medium pass TPS__00145__sp_M4HYC6_TPSD2_PINCO
PITA_000054962-RA Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
PITA_000054963-RA Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
PITA_000055269-RA Terpenoid TPS medium pass TPS__00189__sp_R9QMY8_CAMPS_PINCO
PITA_000057754-RA Terpenoid TPS low borderline TPS__00103__sp_F2XFA1_BPHS4_PICSI
PITA_000057755-RA Terpenoid TPS medium pass TPS__00101__sp_F2XF99_FARNS_PICXS
PITA_000057896-RA Terpenoid TPS medium pass TPS__00004__sp_A0A0M5L832_TPS14_TRIWF
PITA_000059237-RA Terpenoid TPS medium pass TPS__00144__sp_M4HY08_MPIM1_PINBN
PITA_000059316-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000059317-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000059417-RA Terpenoid TPS medium pass TPS__00100__sp_F2XF98_CINES_PICXS
PITA_000059666-RA Terpenoid TPS medium pass TPS__00188__sp_R9QMW8_3CAR1_PINCO
PITA_000059667-RA Terpenoid TPS medium pass TPS__00188__sp_R9QMW8_3CAR1_PINCO
PITA_000059737-RA Terpenoid TPS low borderline TPS__00100__sp_F2XF98_CINES_PICXS
PITA_000059870-RA Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
PITA_000059893-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000060069-RA Terpenoid TPS low borderline TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000060070-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000060071-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000060338-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000060680-RA Terpenoid TPS medium pass TPS__00100__sp_F2XF98_CINES_PICXS
PITA_000060681-RA Terpenoid TPS medium pass TPS__00180__sp_R9QMR5_ATERP_PINBN
PITA_000060877-RA Terpenoid TPS low borderline TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000060878-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000061394-RA Terpenoid TPS medium pass TPS__00191__sp_R9QMZ0_ATERP_PINCO
PITA_000061595-RA Terpenoid TPS medium pass TPS__00099__sp_F2XF97_AHUMS_PICGL
PITA_000061686-RA Terpenoid TPS medium pass TPS__00102__sp_F2XFA0_TPSLS_PICXS
PITA_000061687-RA Terpenoid TPS medium pass TPS__00068__sp_C0PPM5_ALGPS_PICSI