PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Gene Pathway Family Confidence Status Best Target
3A_I16_VO_L_2173_T_10/20|m.31673.mrna1 Alkaloid TRI/TRII medium pass TRI_TRII__00005__sp_P50162_TRN1_DATST
3A_I16_VO_L_2173_T_10/20|m.31673.mrna2 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
5A_I16_VO_L_1743_T_122/188|m.49199.mrna1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
5A_I16_VO_L_1743_T_122/188|m.49199.mrna2 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
5A_I16_VO_L_1743_T_122/188|m.49199.mrna3 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
5A_I16_VO_L_1743_T_122/188|m.49199.mrna4 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
6A_I23_VO_L_1435_T_17/105|m.59658.mrna1 Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
PITA_000002462-RA Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
PITA_000002463-RA Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
PITA_000004651-RA Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000012735-RA Alkaloid TRI/TRII medium pass TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
PITA_000012903-RA Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000014218-RA Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
PITA_000014425-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000014728-RA Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
PITA_000015159-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000016434-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000016554-RA Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
PITA_000016799-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000016800-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000016801-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000017429-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000017599-RA Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
PITA_000020751-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000022230-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000023678-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000024663-RA Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000025251-RA Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
PITA_000026143-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000026475-RA Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000026985-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000029999-RA Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
PITA_000031676-RA Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
PITA_000031811-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000032936-RA Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000033362-RA Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
PITA_000033900-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000036679-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000036680-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000037682-RA Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
PITA_000037972-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000038763-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000038764-RA Alkaloid TRI/TRII medium borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000039020-RA Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST
PITA_000039413-RA Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000040096-RA Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
PITA_000042538-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000042713-RA Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
PITA_000043332-RA Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
PITA_000044115-RA Alkaloid TRI/TRII low borderline TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB