PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Gene Pathway Family Confidence Status
PITA_000046116-RA Alkaloid TRI/TRII medium pass
PITA_000047073-RA Alkaloid TRI/TRII low borderline
PITA_000047195-RA Alkaloid TRI/TRII medium pass
PITA_000047452-RA Alkaloid TRI/TRII medium pass
PITA_000047952-RA Alkaloid TRI/TRII medium pass
PITA_000048625-RA Alkaloid TRI/TRII medium pass
PITA_000048871-RA Alkaloid TRI/TRII low borderline
PITA_000049467-RA Alkaloid TRI/TRII low borderline
PITA_000050451-RA Alkaloid TRI/TRII medium pass
PITA_000051695-RA Alkaloid TRI/TRII low borderline
PITA_000052597-RA Alkaloid TRI/TRII medium pass
PITA_000053463-RA Alkaloid TRI/TRII medium pass
PITA_000053464-RA Alkaloid TRI/TRII medium pass
PITA_000054430-RA Alkaloid TRI/TRII low borderline
PITA_000054740-RA Alkaloid TRI/TRII medium pass
PITA_000054741-RA Alkaloid TRI/TRII medium pass
PITA_000055375-RA Alkaloid TRI/TRII medium pass
PITA_000056307-RA Alkaloid TRI/TRII medium pass
PITA_000058309-RA Alkaloid TRI/TRII medium pass
PITA_000058527-RA Alkaloid TRI/TRII medium pass
PITA_000059057-RA Alkaloid TRI/TRII medium pass
PITA_000059478-RA Alkaloid TRI/TRII medium pass
PITA_000059479-RA Alkaloid TRI/TRII medium pass
PITA_000061733-RA Alkaloid TRI/TRII low borderline
PITA_000061992-RA Alkaloid TRI/TRII low borderline
PITA_000062643-RA Alkaloid TRI/TRII medium pass
PITA_000064561-RA Alkaloid TRI/TRII medium pass
PITA_000064562-RA Alkaloid TRI/TRII medium pass
PITA_000065891-RA Alkaloid TRI/TRII low borderline
PITA_000066153-RA Alkaloid TRI/TRII medium pass
PITA_000066154-RA Alkaloid TRI/TRII medium pass
PITA_000067346-RA Alkaloid TRI/TRII medium pass
PITA_000068296-RA Alkaloid TRI/TRII medium pass
PITA_000068775-RA Alkaloid TRI/TRII low borderline
PITA_000068776-RA Alkaloid TRI/TRII medium pass
PITA_000069724-RA Alkaloid TRI/TRII medium pass
PITA_000071636-RA Alkaloid TRI/TRII medium pass
PITA_000072327-RA Alkaloid TRI/TRII low borderline
PITA_000074356-RA Alkaloid TRI/TRII medium pass
PITA_000074480-RA Alkaloid TRI/TRII low borderline
PITA_000074582-RA Alkaloid TRI/TRII medium pass
PITA_000075061-RA Alkaloid TRI/TRII medium pass
PITA_000075090-RA Alkaloid TRI/TRII medium pass
PITA_000075106-RA Alkaloid TRI/TRII medium pass
PITA_000075288-RA Alkaloid TRI/TRII medium pass
PITA_000076473-RA Alkaloid TRI/TRII medium pass
PITA_000077737-RA Alkaloid TRI/TRII medium pass
PITA_000077899-RA Alkaloid TRI/TRII medium pass
PITA_000078303-RA Alkaloid TRI/TRII medium pass
PITA_000078790-RA Alkaloid TRI/TRII medium pass