PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
1A_I11_NT_comp49445_c0_seq3|m.4479.mrna1 Flavonoid UFGT medium pass
1A_all_VO_L_10621_T_8/20|m.2398.mrna1 Flavonoid UFGT high pass
1A_all_VO_L_5517_T_887/930|m.2020.mrna1 Flavonoid UFGT high pass
2A_I4_VO_L_831_T_41/65|m.26747.mrna1 Flavonoid UFGT medium pass
3A_I19_VO_L_1_T_135982/241978|m.34819.mrna1 Flavonoid UFGT high pass
5A_I16_VO_L_3074_T_89/89|m.49426.mrna2 Flavonoid UFGT high pass
5A_I16_VO_L_4_T_65838/214906|m.48071.mrna1 Flavonoid UFGT high pass
6A_I23_NT_comp44453_c0_seq2|m.58668.mrna1 Flavonoid UFGT medium pass
PITA_000000003-RA Flavonoid UFGT medium pass
PITA_000000004-RA Flavonoid UFGT high pass
PITA_000000276-RA Flavonoid UFGT high pass
PITA_000000385-RA Flavonoid UFGT medium pass
PITA_000000673-RA Flavonoid UFGT high pass
PITA_000000695-RA Flavonoid UFGT low borderline
PITA_000000941-RA Flavonoid UFGT low borderline
PITA_000001275-RA Flavonoid UFGT medium pass
PITA_000001285-RA Flavonoid UFGT high pass
PITA_000001286-RA Flavonoid UFGT medium pass
PITA_000001287-RA Flavonoid UFGT high pass
PITA_000001288-RA Flavonoid UFGT high pass
PITA_000001299-RA Flavonoid UFGT medium pass
PITA_000001305-RA Flavonoid UFGT medium pass
PITA_000001645-RA Flavonoid UFGT high pass
PITA_000002710-RA Flavonoid UFGT high pass
PITA_000003434-RA Flavonoid UFGT high pass
PITA_000003505-RA Flavonoid UFGT medium pass
PITA_000003789-RA Flavonoid UFGT medium pass
PITA_000004391-RA Flavonoid UFGT high pass
PITA_000006175-RA Flavonoid UFGT high pass
PITA_000006739-RA Flavonoid UFGT high pass
PITA_000008221-RA Flavonoid UFGT high pass
PITA_000009154-RA Flavonoid UFGT medium pass
PITA_000009157-RA Flavonoid UFGT medium pass
PITA_000009396-RA Flavonoid UFGT low borderline
PITA_000010329-RA Flavonoid UFGT high pass
PITA_000010599-RA Flavonoid UFGT high pass
PITA_000011382-RA Flavonoid UFGT low borderline
PITA_000011693-RA Flavonoid UFGT medium pass
PITA_000011696-RA Flavonoid UFGT medium pass
PITA_000011698-RA Flavonoid UFGT medium pass
PITA_000011699-RA Flavonoid UFGT high pass
PITA_000011895-RA Flavonoid UFGT low borderline
PITA_000011896-RA Flavonoid UFGT low borderline
PITA_000012599-RA Flavonoid UFGT high pass
PITA_000013003-RA Flavonoid UFGT medium pass
PITA_000013163-RA Flavonoid UFGT high pass
PITA_000013217-RA Flavonoid UFGT medium pass
PITA_000013356-RA Flavonoid UFGT high pass
PITA_000013681-RA Flavonoid UFGT high pass
PITA_000014467-RA Flavonoid UFGT medium pass