PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Current group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.92% Phenylpropanoid pathway 23.93% Alkaloid pathway 19.88% Flavonoid pathway 15.18% Rosmarinic acid pathway 7.75% Steroid pathway 5.34%
Family Distribution
C4H 5.65% C3'H/CYP98A 5.17% UGT 4.84% 4CL 4.56% CYP76 4.22% BAHD 4.21% POD 4.18% 7DLGT 3.84%
Other Families 63.32%
More Families (98)
UFGT 426 3.36% IFS 424 3.34% TPS 369 2.91% F3H 301 2.37% DWF4/CYP90B1 292 2.3% CAD 273 2.15% GES 258 2.03% F3'H/CYP75B 253 1.99% CAS 239 1.88% BR6OX2/CYP85A2 234 1.84% G8O/G8H 232 1.83% LAC 227 1.79% T3O 208 1.64% H6H 200 1.58% IFR 189 1.49% T16H 183 1.44% CODM/T6ODM 181 1.43% IO 156 1.23% NMT 151 1.19% F3'5'H/CYP75A 138 1.09% TRI/TRII 135 1.06% SGD 134 1.06% COMT 128 1.01% HCT 118 0.93% PAL 117 0.92% STR 98 0.77% SMT1/SMT2/SMT3 98 0.77% FNS 96 0.76% F5H/CYP84A 94 0.74% PYKS 92 0.72% 8HGO 89 0.7% 7DLH 89 0.7% RAS 85 0.67% GS 84 0.66% 16OMT 80 0.63% PMT 76 0.6% SLS 75 0.59% ANR 74 0.58% HMGR 74 0.58% ANS/LDOX 73 0.58% DFR 69 0.54% CYP90D1 69 0.54% CHS 67 0.53% CCR 64 0.5% LAMT 60 0.47% NCS 59 0.46% CSE 54 0.43% TAT 50 0.39% CPD/CYP90A1 47 0.37% GGPPS 43 0.34% BR6OX1/CYP85A1 41 0.32% CYP80B1 39 0.31% ISY 38 0.3% BBE 34 0.27% CYP71 31 0.24% XMT_MXMT_DXMT 28 0.22% ADC 26 0.2% ODC 24 0.19% CHI 24 0.19% FPPS 24 0.19% CYP719 23 0.18% COR 22 0.17% 6OMT_4OMT_SOMT 19 0.15% CCoAOMT 18 0.14% ROT3/CYP90C1 18 0.14% CNMT 17 0.13% MPO 15 0.12% FLS 15 0.12% DWF1 13 0.1% DET2 12 0.09% AACT 12 0.09% CYP51G1 10 0.08% CPR 9 0.07% HDS/IspG 9 0.07% IDI 9 0.07% MVK 8 0.06% HPPR 7 0.06% DWF5 7 0.06% CYP80F1 6 0.05% CMK/IspE 6 0.05% DXS 6 0.05% TDC 4 0.03% SQS/FDFT1 4 0.03% SQE 4 0.03% HYD1 3 0.02% CPI1 3 0.02% HDR/IspH 3 0.02% HMGS 3 0.02% MVD 3 0.02% FK 2 0.02% SMO1/SMO2 2 0.02% DWF7 2 0.02% DXR 2 0.02% PMK 2 0.02% MDS/IspF 2 0.02% TYDC_DDC 1 0.01% MCT/IspD 1 0.01% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
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Gene Pathway Family Confidence Status Best Target
PITA_000011698-RA Terpenoid UGT low borderline UGT__00108__sp_Q9SYK9_U74E2_ARATH
PITA_000011699-RA Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
PITA_000011895-RA Terpenoid UGT low borderline UGT__00109__sp_Q9ZQ94_U73C5_ARATH
PITA_000011896-RA Terpenoid UGT medium pass UGT__00075__sp_Q7Y232_U73B4_ARATH
PITA_000012598-RA Terpenoid UGT low borderline UGT__00095__sp_Q9LSY6_U71B6_ARATH
PITA_000012599-RA Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
PITA_000013003-RA Terpenoid UGT medium pass UGT__00023__sp_B3TKC8_88F1G_MALDO
PITA_000013163-RA Terpenoid UGT medium pass UGT__00102__sp_Q9LZD8_U89A2_ARATH
PITA_000013217-RA Terpenoid UGT medium pass UGT__00079__sp_Q94A84_U72E1_ARATH
PITA_000013356-RA Terpenoid UGT medium pass UGT__00105__sp_Q9SK82_U85A1_ARATH
PITA_000013359-RA Terpenoid UGT low borderline UGT__00056__sp_O48715_U76D1_ARATH
PITA_000013681-RA Terpenoid UGT medium pass UGT__00040__sp_K4D422_U73C4_SOLLC
PITA_000014466-RA Terpenoid UGT medium pass UGT__00011__sp_A0A0K0PVW1_UGT10_PANGI
PITA_000014467-RA Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
PITA_000014566-RA Terpenoid UGT medium pass UGT__00037__sp_I1LCI8_FG2KO_SOYBN
PITA_000014574-RA Terpenoid UGT medium pass UGT__00037__sp_I1LCI8_FG2KO_SOYBN
PITA_000014594-RA Terpenoid UGT medium pass UGT__00106__sp_Q9SKC5_U74D1_ARATH
PITA_000014676-RA Terpenoid UGT medium pass UGT__00077__sp_Q8VZE9_U73B1_ARATH
PITA_000015264-RA Terpenoid UGT medium pass UGT__00075__sp_Q7Y232_U73B4_ARATH
PITA_000015764-RA Terpenoid UGT medium pass UGT__00034__sp_F8WLS6_UGT6_CATRO
PITA_000015765-RA Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
PITA_000016479-RA Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
PITA_000016680-RA Terpenoid UGT medium pass UGT__00040__sp_K4D422_U73C4_SOLLC
PITA_000016681-RA Terpenoid UGT medium pass UGT__00045__sp_K4GKX2_73C10_BARVU
PITA_000016686-RA Terpenoid UGT medium pass UGT__00111__sp_Q9ZQ99_U73C1_ARATH
PITA_000016714-RA Terpenoid UGT low borderline UGT__00050__sp_O22822_U74F2_ARATH
PITA_000016835-RA Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
PITA_000016837-RA Terpenoid UGT low borderline UGT__00088__sp_Q9LK73_U88A1_ARATH
PITA_000016840-RA Terpenoid UGT low borderline UGT__00078__sp_Q8W491_U73B3_ARATH
PITA_000016841-RA Terpenoid UGT low borderline UGT__00103__sp_Q9M156_U72B1_ARATH
PITA_000017223-RA Terpenoid UGT medium pass UGT__00110__sp_Q9ZQ95_U73C6_ARATH
PITA_000017224-RA Terpenoid UGT low borderline UGT__00092__sp_Q9LNI1_U72B3_ARATH
PITA_000017645-RA Terpenoid UGT medium pass UGT__00034__sp_F8WLS6_UGT6_CATRO
PITA_000018680-RA Terpenoid UGT low borderline UGT__00112__sp_Q9ZQG4_U73B5_ARATH
PITA_000018681-RA Terpenoid UGT medium pass UGT__00109__sp_Q9ZQ94_U73C5_ARATH
PITA_000019307-RA Terpenoid UGT medium pass UGT__00108__sp_Q9SYK9_U74E2_ARATH
PITA_000019345-RA Terpenoid UGT low borderline UGT__00017__sp_A0A224AKZ9_708G2_CITUN
PITA_000020009-RA Terpenoid UGT medium pass UGT__00047__sp_K7NBW3_74AC1_SIRGR
PITA_000020213-RA Terpenoid UGT medium pass UGT__00075__sp_Q7Y232_U73B4_ARATH
PITA_000020910-RA Terpenoid UGT medium pass UGT__00106__sp_Q9SKC5_U74D1_ARATH
PITA_000020914-RA Terpenoid UGT medium pass UGT__00049__sp_O22820_U74F1_ARATH
PITA_000020941-RA Terpenoid UGT low borderline UGT__00111__sp_Q9ZQ99_U73C1_ARATH
PITA_000021086-RA Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
PITA_000021089-RA Terpenoid UGT medium pass UGT__00100__sp_Q9LVF0_U84A2_ARATH
PITA_000021827-RA Terpenoid UGT medium pass UGT__00041__sp_K4GGT4_73C11_BARVU
PITA_000021881-RA Terpenoid UGT medium pass UGT__00024__sp_B3VI56_U91D2_STERE
PITA_000021895-RA Terpenoid UGT medium pass UGT__00114__sp_U3THC0_FG2KI_SOYBN
PITA_000021946-RA Terpenoid UGT medium pass UGT__00043__sp_K4GHS2_73C13_BARVU
PITA_000022084-RA Terpenoid UGT low borderline UGT__00082__sp_Q9C9B0_U89B1_ARATH
PITA_000022171-RA Terpenoid UGT low borderline UGT__00103__sp_Q9M156_U72B1_ARATH