PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Current group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.92% Phenylpropanoid pathway 23.93% Alkaloid pathway 19.88% Flavonoid pathway 15.18% Rosmarinic acid pathway 7.75% Steroid pathway 5.34%
Family Distribution
C4H 5.65% C3'H/CYP98A 5.17% UGT 4.84% 4CL 4.56% CYP76 4.22% BAHD 4.21% POD 4.18% 7DLGT 3.84%
Other Families 63.32%
More Families (98)
UFGT 426 3.36% IFS 424 3.34% TPS 369 2.91% F3H 301 2.37% DWF4/CYP90B1 292 2.3% CAD 273 2.15% GES 258 2.03% F3'H/CYP75B 253 1.99% CAS 239 1.88% BR6OX2/CYP85A2 234 1.84% G8O/G8H 232 1.83% LAC 227 1.79% T3O 208 1.64% H6H 200 1.58% IFR 189 1.49% T16H 183 1.44% CODM/T6ODM 181 1.43% IO 156 1.23% NMT 151 1.19% F3'5'H/CYP75A 138 1.09% TRI/TRII 135 1.06% SGD 134 1.06% COMT 128 1.01% HCT 118 0.93% PAL 117 0.92% STR 98 0.77% SMT1/SMT2/SMT3 98 0.77% FNS 96 0.76% F5H/CYP84A 94 0.74% PYKS 92 0.72% 8HGO 89 0.7% 7DLH 89 0.7% RAS 85 0.67% GS 84 0.66% 16OMT 80 0.63% PMT 76 0.6% SLS 75 0.59% ANR 74 0.58% HMGR 74 0.58% ANS/LDOX 73 0.58% DFR 69 0.54% CYP90D1 69 0.54% CHS 67 0.53% CCR 64 0.5% LAMT 60 0.47% NCS 59 0.46% CSE 54 0.43% TAT 50 0.39% CPD/CYP90A1 47 0.37% GGPPS 43 0.34% BR6OX1/CYP85A1 41 0.32% CYP80B1 39 0.31% ISY 38 0.3% BBE 34 0.27% CYP71 31 0.24% XMT_MXMT_DXMT 28 0.22% ADC 26 0.2% ODC 24 0.19% CHI 24 0.19% FPPS 24 0.19% CYP719 23 0.18% COR 22 0.17% 6OMT_4OMT_SOMT 19 0.15% CCoAOMT 18 0.14% ROT3/CYP90C1 18 0.14% CNMT 17 0.13% MPO 15 0.12% FLS 15 0.12% DWF1 13 0.1% DET2 12 0.09% AACT 12 0.09% CYP51G1 10 0.08% CPR 9 0.07% HDS/IspG 9 0.07% IDI 9 0.07% MVK 8 0.06% HPPR 7 0.06% DWF5 7 0.06% CYP80F1 6 0.05% CMK/IspE 6 0.05% DXS 6 0.05% TDC 4 0.03% SQS/FDFT1 4 0.03% SQE 4 0.03% HYD1 3 0.02% CPI1 3 0.02% HDR/IspH 3 0.02% HMGS 3 0.02% MVD 3 0.02% FK 2 0.02% SMO1/SMO2 2 0.02% DWF7 2 0.02% DXR 2 0.02% PMK 2 0.02% MDS/IspF 2 0.02% TYDC_DDC 1 0.01% MCT/IspD 1 0.01% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
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Gene Pathway Family Confidence Status Best Target
PITA_000022172-RA Terpenoid UGT low borderline UGT__00075__sp_Q7Y232_U73B4_ARATH
PITA_000022566-RA Terpenoid UGT low borderline UGT__00037__sp_I1LCI8_FG2KO_SOYBN
PITA_000022810-RA Terpenoid UGT medium pass UGT__00106__sp_Q9SKC5_U74D1_ARATH
PITA_000023662-RA Terpenoid UGT medium pass UGT__00001__sp_A0A067YB04_UGT1_PUEML
PITA_000023663-RA Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
PITA_000023706-RA Terpenoid UGT medium pass UGT__00001__sp_A0A067YB04_UGT1_PUEML
PITA_000023707-RA Terpenoid UGT low borderline UGT__00095__sp_Q9LSY6_U71B6_ARATH
PITA_000023748-RA Terpenoid UGT medium pass UGT__00075__sp_Q7Y232_U73B4_ARATH
PITA_000023761-RA Terpenoid UGT medium pass UGT__00022__sp_B2XBQ5_85A19_PRUDU
PITA_000023762-RA Terpenoid UGT medium pass UGT__00047__sp_K7NBW3_74AC1_SIRGR
PITA_000024203-RA Terpenoid UGT medium pass UGT__00031__sp_F8WKW0_UGT1_GARJA
PITA_000024207-RA Terpenoid UGT low borderline UGT__00093__sp_Q9LR44_U75B1_ARATH
PITA_000024257-RA Terpenoid UGT medium pass UGT__00047__sp_K7NBW3_74AC1_SIRGR
PITA_000024258-RA Terpenoid UGT medium pass UGT__00016__sp_A0A193AUF6_GGT23_PUNGR
PITA_000024260-RA Terpenoid UGT low borderline UGT__00106__sp_Q9SKC5_U74D1_ARATH
PITA_000024314-RA Terpenoid UGT low borderline UGT__00115__sp_U3U992_UGT8_CATRO
PITA_000024316-RA Terpenoid UGT medium pass UGT__00034__sp_F8WLS6_UGT6_CATRO
PITA_000024317-RA Terpenoid UGT medium pass UGT__00034__sp_F8WLS6_UGT6_CATRO
PITA_000024358-RA Terpenoid UGT low borderline UGT__00099__sp_Q9LTH3_U76E1_ARATH
PITA_000024652-RA Terpenoid UGT low borderline UGT__00026__sp_D3THI6_U7A15_MALDO
PITA_000025329-RA Terpenoid UGT medium pass UGT__00108__sp_Q9SYK9_U74E2_ARATH
PITA_000026317-RA Terpenoid UGT low borderline UGT__00110__sp_Q9ZQ95_U73C6_ARATH
PITA_000026432-RA Terpenoid UGT low borderline UGT__00077__sp_Q8VZE9_U73B1_ARATH
PITA_000026503-RA Terpenoid UGT low borderline UGT__00088__sp_Q9LK73_U88A1_ARATH
PITA_000026653-RA Terpenoid UGT medium pass UGT__00034__sp_F8WLS6_UGT6_CATRO
PITA_000026661-RA Terpenoid UGT medium pass UGT__00108__sp_Q9SYK9_U74E2_ARATH
PITA_000026969-RA Terpenoid UGT low borderline UGT__00034__sp_F8WLS6_UGT6_CATRO
PITA_000027067-RA Terpenoid UGT medium pass UGT__00075__sp_Q7Y232_U73B4_ARATH
PITA_000027068-RA Terpenoid UGT medium pass UGT__00075__sp_Q7Y232_U73B4_ARATH
PITA_000027219-RA Terpenoid UGT medium pass UGT__00031__sp_F8WKW0_UGT1_GARJA
PITA_000027220-RA Terpenoid UGT medium pass UGT__00093__sp_Q9LR44_U75B1_ARATH
PITA_000027542-RA Terpenoid UGT low borderline UGT__00077__sp_Q8VZE9_U73B1_ARATH
PITA_000027898-RA Terpenoid UGT medium pass UGT__00038__sp_K4CWS6_U75C1_SOLLC
PITA_000027927-RA Terpenoid UGT medium pass UGT__00034__sp_F8WLS6_UGT6_CATRO
PITA_000029227-RA Terpenoid UGT medium pass UGT__00041__sp_K4GGT4_73C11_BARVU
PITA_000029274-RA Terpenoid UGT medium pass UGT__00041__sp_K4GGT4_73C11_BARVU
PITA_000029290-RA Terpenoid UGT low borderline UGT__00034__sp_F8WLS6_UGT6_CATRO
PITA_000029615-RA Terpenoid UGT medium pass UGT__00016__sp_A0A193AUF6_GGT23_PUNGR
PITA_000029616-RA Terpenoid UGT medium pass UGT__00070__sp_Q5XF20_U84A1_ARATH
PITA_000029617-RA Terpenoid UGT medium pass UGT__00016__sp_A0A193AUF6_GGT23_PUNGR
PITA_000029928-RA Terpenoid UGT medium pass UGT__00105__sp_Q9SK82_U85A1_ARATH
PITA_000029929-RA Terpenoid UGT medium pass UGT__00105__sp_Q9SK82_U85A1_ARATH
PITA_000029931-RA Terpenoid UGT medium pass UGT__00105__sp_Q9SK82_U85A1_ARATH
PITA_000030133-RA Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
PITA_000031343-RA Terpenoid UGT medium pass UGT__00110__sp_Q9ZQ95_U73C6_ARATH
PITA_000031665-RA Terpenoid UGT medium pass UGT__00022__sp_B2XBQ5_85A19_PRUDU
PITA_000031732-RA Terpenoid UGT low borderline UGT__00019__sp_A0A2R4LMF9_73C25_BARVU
PITA_000031733-RA Terpenoid UGT medium pass UGT__00030__sp_D3UAG3_U88F2_PYRCO
PITA_000031861-RA Terpenoid UGT medium pass UGT__00037__sp_I1LCI8_FG2KO_SOYBN
PITA_000031898-RA Terpenoid UGT low borderline UGT__00047__sp_K7NBW3_74AC1_SIRGR