PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

6129
Candidate Protein Records
5262
Pathway-Level Records
12692
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
PITA_000080007-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000080176-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000081357-RA Phenylpropanoid F5H/CYP84A medium pass
PITA_000081358-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000081593-RA Phenylpropanoid F5H/CYP84A low borderline
PITA_000081721-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000082899-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000082967-RA Phenylpropanoid F5H/CYP84A medium pass
PITA_000084047-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000084135-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000085579-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000085745-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000086381-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000086849-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000087463-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000087950-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000088290-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000088453-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000089316-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000089482-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000091261-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000092926-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000093264-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000094184-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000094203-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000094695-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000095071-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000095170-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000095452-RA Phenylpropanoid F5H/CYP84A medium borderline
PITA_000096549-RA Phenylpropanoid F5H/CYP84A medium borderline
2A_all_NT_comp86965_c0_seq1|m.13007.mrna1 Phenylpropanoid HCT medium pass
3A_I18_VO_L_2_T_128098/136250|m.33128.mrna1 Phenylpropanoid HCT medium pass
PITA_000000833-RA Phenylpropanoid HCT medium pass
PITA_000000950-RA Phenylpropanoid HCT low borderline
PITA_000002175-RA Phenylpropanoid HCT medium pass
PITA_000002181-RA Phenylpropanoid HCT low borderline
PITA_000002834-RA Phenylpropanoid HCT low borderline
PITA_000002844-RA Phenylpropanoid HCT low borderline
PITA_000006323-RA Phenylpropanoid HCT medium pass
PITA_000009533-RA Phenylpropanoid HCT medium pass
PITA_000011445-RA Phenylpropanoid HCT medium pass
PITA_000011537-RA Phenylpropanoid HCT low borderline
PITA_000011713-RA Phenylpropanoid HCT low borderline
PITA_000011715-RA Phenylpropanoid HCT low borderline
PITA_000012117-RA Phenylpropanoid HCT low borderline
PITA_000012243-RA Phenylpropanoid HCT medium pass
PITA_000014170-RA Phenylpropanoid HCT medium pass
PITA_000014608-RA Phenylpropanoid HCT low borderline
PITA_000016979-RA Phenylpropanoid HCT low borderline
PITA_000017482-RA Phenylpropanoid HCT low borderline