PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status Best Target
PITA_000031902-RA Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000032526-RA Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000033128-RA Flavonoid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
PITA_000033152-RA Flavonoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
PITA_000036704-RA Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000036705-RA Flavonoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
PITA_000037247-RA Flavonoid 4CL medium pass 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
PITA_000037248-RA Flavonoid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
PITA_000038295-RA Flavonoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000038296-RA Flavonoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
PITA_000038396-RA Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000038607-RA Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000038992-RA Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000039512-RA Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000039543-RA Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000039814-RA Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000041845-RA Flavonoid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU
PITA_000042074-RA Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000042075-RA Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000042076-RA Flavonoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000042077-RA Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000042458-RA Flavonoid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000042615-RA Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000043490-RA Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000047041-RA Flavonoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000047042-RA Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000047043-RA Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000047795-RA Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000047804-RA Flavonoid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
PITA_000048142-RA Flavonoid 4CL medium pass 4CL__00008__sp_Q42982_4CL2_ORYSJ
PITA_000048780-RA Flavonoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
PITA_000049377-RA Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000049975-RA Flavonoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000050416-RA Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000050418-RA Flavonoid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000051705-RA Flavonoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
PITA_000052725-RA Flavonoid 4CL medium pass 4CL__00008__sp_Q42982_4CL2_ORYSJ
PITA_000054408-RA Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000055602-RA Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000056227-RA Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000056228-RA Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000057252-RA Flavonoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
PITA_000057253-RA Flavonoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
PITA_000057438-RA Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000057952-RA Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000057953-RA Flavonoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000058083-RA Flavonoid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU
PITA_000058126-RA Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000058127-RA Flavonoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000058432-RA Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH