PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

6129
Candidate Protein Records
5262
Pathway-Level Records
12692
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
PITA_000095920-RA Steroid DWF4/CYP90B1 low borderline
PITA_000096080-RA Steroid DWF4/CYP90B1 low borderline
PITAhm_000291-RA Steroid DWF4/CYP90B1 medium borderline
PITAhm_000366-RA Steroid DWF4/CYP90B1 medium borderline
PITAhm_000494-RA Steroid DWF4/CYP90B1 low borderline
PITAhm_000578-RA Steroid DWF4/CYP90B1 low borderline
PITAhm_001415-RA Steroid DWF4/CYP90B1 low borderline
PITAhm_002308-RA Steroid DWF4/CYP90B1 low borderline
PITAhm_002405-RA Steroid DWF4/CYP90B1 low borderline
PITAhm_003318-RA Steroid DWF4/CYP90B1 medium borderline
PITA_000015503-RA Steroid DWF5 low borderline
PITA_000020653-RA Steroid DWF5 low borderline
PITA_000020654-RA Steroid DWF5 low borderline
PITA_000020655-RA Steroid DWF5 medium pass
PITA_000026552-RA Steroid DWF5 medium borderline
PITA_000032476-RA Steroid DWF5 low borderline
PITA_000034196-RA Steroid DWF5 low borderline
PITA_000075788-RA Steroid DWF7 low borderline
PITA_000077496-RA Steroid DWF7 medium pass
6A_all_NT_comp92759_c0_seq1|m.51729.mrna2 Steroid FK high pass
PITAhm_003193-RA Steroid FK high pass
2A_all_NT_comp86965_c0_seq1|m.13007.mrna1 Steroid HYD1 low borderline
PITA_000037628-RA Steroid HYD1 low borderline
PITA_000096514-RA Steroid HYD1 high pass
PITA_000001644-RA Steroid ROT3/CYP90C1 low borderline
PITA_000023810-RA Steroid ROT3/CYP90C1 low borderline
PITA_000023812-RA Steroid ROT3/CYP90C1 low borderline
PITA_000026842-RA Steroid ROT3/CYP90C1 medium borderline
PITA_000027632-RA Steroid ROT3/CYP90C1 medium borderline
PITA_000030103-RA Steroid ROT3/CYP90C1 medium pass
PITA_000036127-RA Steroid ROT3/CYP90C1 medium borderline
PITA_000048874-RA Steroid ROT3/CYP90C1 medium borderline
PITA_000049067-RA Steroid ROT3/CYP90C1 low borderline
PITA_000052592-RA Steroid ROT3/CYP90C1 medium borderline
PITA_000058399-RA Steroid ROT3/CYP90C1 low borderline
PITA_000070329-RA Steroid ROT3/CYP90C1 medium pass
PITA_000070751-RA Steroid ROT3/CYP90C1 low borderline
PITA_000076411-RA Steroid ROT3/CYP90C1 low borderline
PITA_000078718-RA Steroid ROT3/CYP90C1 low borderline
PITA_000086429-RA Steroid ROT3/CYP90C1 medium borderline
PITA_000086967-RA Steroid ROT3/CYP90C1 low borderline
PITA_000092038-RA Steroid ROT3/CYP90C1 low borderline
PITA_000015471-RA Steroid SMO1/SMO2 medium pass
PITA_000036766-RA Steroid SMO1/SMO2 medium pass
PITA_000001058-RA Steroid SMT1/SMT2/SMT3 medium pass
PITA_000005133-RA Steroid SMT1/SMT2/SMT3 low borderline
PITA_000006671-RA Steroid SMT1/SMT2/SMT3 low borderline
PITA_000008207-RA Steroid SMT1/SMT2/SMT3 low borderline
PITA_000008521-RA Steroid SMT1/SMT2/SMT3 low borderline
PITA_000009051-RA Steroid SMT1/SMT2/SMT3 medium pass