PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
1A_all_VO_L_10621_T_8/20|m.2398.mrna1 Alkaloid 7DLGT medium pass
1A_all_VO_L_5517_T_887/930|m.2020.mrna1 Alkaloid 7DLGT medium pass
2A_I4_VO_L_831_T_41/65|m.26747.mrna1 Alkaloid 7DLGT medium pass
3A_I19_VO_L_1_T_135982/241978|m.34819.mrna1 Alkaloid 7DLGT medium pass
5A_I16_VO_L_3074_T_89/89|m.49426.mrna2 Alkaloid 7DLGT medium pass
5A_I16_VO_L_4_T_65838/214906|m.48071.mrna1 Alkaloid 7DLGT medium pass
6A_I23_NT_comp44453_c0_seq2|m.58668.mrna1 Alkaloid 7DLGT low borderline
PITA_000000004-RA Alkaloid 7DLGT low borderline
PITA_000000276-RA Alkaloid 7DLGT low borderline
PITA_000000385-RA Alkaloid 7DLGT high pass
PITA_000000673-RA Alkaloid 7DLGT medium pass
PITA_000000694-RA Alkaloid 7DLGT low borderline
PITA_000000941-RA Alkaloid 7DLGT low borderline
PITA_000001275-RA Alkaloid 7DLGT low borderline
PITA_000001285-RA Alkaloid 7DLGT medium pass
PITA_000001286-RA Alkaloid 7DLGT low borderline
PITA_000001287-RA Alkaloid 7DLGT medium pass
PITA_000001288-RA Alkaloid 7DLGT medium pass
PITA_000001296-RA Alkaloid 7DLGT low borderline
PITA_000001299-RA Alkaloid 7DLGT medium pass
PITA_000001305-RA Alkaloid 7DLGT medium pass
PITA_000001645-RA Alkaloid 7DLGT medium pass
PITA_000002710-RA Alkaloid 7DLGT medium pass
PITA_000003434-RA Alkaloid 7DLGT medium pass
PITA_000003505-RA Alkaloid 7DLGT medium pass
PITA_000003513-RA Alkaloid 7DLGT low borderline
PITA_000003789-RA Alkaloid 7DLGT medium pass
PITA_000004391-RA Alkaloid 7DLGT high pass
PITA_000005255-RA Alkaloid 7DLGT low borderline
PITA_000006175-RA Alkaloid 7DLGT medium pass
PITA_000006739-RA Alkaloid 7DLGT medium pass
PITA_000007027-RA Alkaloid 7DLGT low borderline
PITA_000008221-RA Alkaloid 7DLGT medium pass
PITA_000009154-RA Alkaloid 7DLGT low borderline
PITA_000009157-RA Alkaloid 7DLGT medium pass
PITA_000009396-RA Alkaloid 7DLGT low borderline
PITA_000010329-RA Alkaloid 7DLGT high pass
PITA_000010599-RA Alkaloid 7DLGT medium pass
PITA_000011355-RA Alkaloid 7DLGT low borderline
PITA_000011693-RA Alkaloid 7DLGT medium pass
PITA_000011696-RA Alkaloid 7DLGT medium pass
PITA_000011698-RA Alkaloid 7DLGT medium pass
PITA_000011699-RA Alkaloid 7DLGT medium pass
PITA_000011895-RA Alkaloid 7DLGT low borderline
PITA_000011896-RA Alkaloid 7DLGT low borderline
PITA_000012599-RA Alkaloid 7DLGT medium pass
PITA_000013003-RA Alkaloid 7DLGT low borderline
PITA_000013163-RA Alkaloid 7DLGT medium pass
PITA_000013217-RA Alkaloid 7DLGT low borderline
PITA_000013356-RA Alkaloid 7DLGT high pass