PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

6129
Candidate Protein Records
5262
Pathway-Level Records
12692
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
PITA_000084076-RA Alkaloid H6H low borderline
PITA_000084358-RA Alkaloid H6H medium borderline
PITA_000084515-RA Alkaloid H6H medium borderline
PITA_000085003-RA Alkaloid H6H medium pass
PITA_000085663-RA Alkaloid H6H medium borderline
PITA_000085822-RA Alkaloid H6H low borderline
PITA_000085828-RA Alkaloid H6H low borderline
PITA_000086484-RA Alkaloid H6H low borderline
PITA_000087312-RA Alkaloid H6H low borderline
PITA_000087522-RA Alkaloid H6H low borderline
PITA_000087712-RA Alkaloid H6H medium pass
PITA_000087849-RA Alkaloid H6H low borderline
PITA_000088200-RA Alkaloid H6H medium pass
PITA_000088603-RA Alkaloid H6H medium borderline
PITA_000088674-RA Alkaloid H6H low borderline
PITA_000089019-RA Alkaloid H6H medium borderline
PITA_000089156-RA Alkaloid H6H low borderline
PITA_000089665-RA Alkaloid H6H low borderline
PITA_000090843-RA Alkaloid H6H low borderline
PITA_000092685-RA Alkaloid H6H medium borderline
PITA_000093098-RA Alkaloid H6H low borderline
PITA_000093512-RA Alkaloid H6H medium borderline
PITA_000093850-RA Alkaloid H6H medium pass
PITA_000094592-RA Alkaloid H6H low borderline
PITA_000094616-RA Alkaloid H6H low borderline
PITA_000095423-RA Alkaloid H6H low borderline
PITA_000095854-RA Alkaloid H6H low borderline
PITA_000096232-RA Alkaloid H6H low borderline
PITAhm_000428-RA Alkaloid H6H medium borderline
PITAhm_000611-RA Alkaloid H6H medium borderline
PITAhm_000756-RA Alkaloid H6H medium borderline
PITAhm_000888-RA Alkaloid H6H medium borderline
PITAhm_000940-RA Alkaloid H6H medium borderline
PITAhm_001891-RA Alkaloid H6H medium borderline
PITAhm_002678-RA Alkaloid H6H medium borderline
PITAhm_002821-RA Alkaloid H6H medium borderline
PITAhm_003188-RA Alkaloid H6H high pass
2A_all_VO_L_10227_T_32/34|m.16145.mrna1 Alkaloid IO medium borderline
3A_all_VO_L_45670_T_3/7|m.29968.mrna1 Alkaloid IO medium borderline
3A_all_VO_L_45670_T_3/7|m.29968.mrna2 Alkaloid IO medium borderline
PITA_000000241-RA Alkaloid IO medium borderline
PITA_000000461-RA Alkaloid IO medium borderline
PITA_000002318-RA Alkaloid IO low borderline
PITA_000003982-RA Alkaloid IO low borderline
PITA_000004257-RA Alkaloid IO medium borderline
PITA_000004396-RA Alkaloid IO low borderline
PITA_000004871-RA Alkaloid IO medium borderline
PITA_000008620-RA Alkaloid IO medium borderline
PITA_000008622-RA Alkaloid IO medium borderline
PITA_000008697-RA Alkaloid IO low borderline