Pinus taeda (pinus_taeda)
Imported from atlas release summary for Pinus taeda.
6129
Candidate Protein Records
5262
Pathway-Level Records
12692
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
12692
Family-Level Calls
C4H
5.65%
C3'H/CYP98A
5.17%
UGT
4.84%
4CL
4.56%
CYP76
4.22%
BAHD
4.21%
POD
4.18%
7DLGT
3.84%
Other Families
63.32%
More Families (98)
UFGT
426
3.36%
IFS
424
3.34%
TPS
369
2.91%
F3H
301
2.37%
DWF4/CYP90B1
292
2.3%
CAD
273
2.15%
GES
258
2.03%
F3'H/CYP75B
253
1.99%
CAS
239
1.88%
BR6OX2/CYP85A2
234
1.84%
G8O/G8H
232
1.83%
LAC
227
1.79%
T3O
208
1.64%
H6H
200
1.58%
IFR
189
1.49%
T16H
183
1.44%
CODM/T6ODM
181
1.43%
IO
156
1.23%
NMT
151
1.19%
F3'5'H/CYP75A
138
1.09%
TRI/TRII
135
1.06%
SGD
134
1.06%
COMT
128
1.01%
HCT
118
0.93%
PAL
117
0.92%
STR
98
0.77%
SMT1/SMT2/SMT3
98
0.77%
FNS
96
0.76%
F5H/CYP84A
94
0.74%
PYKS
92
0.72%
8HGO
89
0.7%
7DLH
89
0.7%
RAS
85
0.67%
GS
84
0.66%
16OMT
80
0.63%
PMT
76
0.6%
SLS
75
0.59%
ANR
74
0.58%
HMGR
74
0.58%
ANS/LDOX
73
0.58%
DFR
69
0.54%
CYP90D1
69
0.54%
CHS
67
0.53%
CCR
64
0.5%
LAMT
60
0.47%
NCS
59
0.46%
CSE
54
0.43%
TAT
50
0.39%
CPD/CYP90A1
47
0.37%
GGPPS
43
0.34%
BR6OX1/CYP85A1
41
0.32%
CYP80B1
39
0.31%
ISY
38
0.3%
BBE
34
0.27%
CYP71
31
0.24%
XMT_MXMT_DXMT
28
0.22%
ADC
26
0.2%
ODC
24
0.19%
CHI
24
0.19%
FPPS
24
0.19%
CYP719
23
0.18%
COR
22
0.17%
6OMT_4OMT_SOMT
19
0.15%
CCoAOMT
18
0.14%
ROT3/CYP90C1
18
0.14%
CNMT
17
0.13%
MPO
15
0.12%
FLS
15
0.12%
DWF1
13
0.1%
DET2
12
0.09%
AACT
12
0.09%
CYP51G1
10
0.08%
CPR
9
0.07%
HDS/IspG
9
0.07%
IDI
9
0.07%
MVK
8
0.06%
HPPR
7
0.06%
DWF5
7
0.06%
CYP80F1
6
0.05%
CMK/IspE
6
0.05%
DXS
6
0.05%
TDC
4
0.03%
SQS/FDFT1
4
0.03%
SQE
4
0.03%
HYD1
3
0.02%
CPI1
3
0.02%
HDR/IspH
3
0.02%
HMGS
3
0.02%
MVD
3
0.02%
FK
2
0.02%
SMO1/SMO2
2
0.02%
DWF7
2
0.02%
DXR
2
0.02%
PMK
2
0.02%
MDS/IspF
2
0.02%
TYDC_DDC
1
0.01%
MCT/IspD
1
0.01%
GPPS
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1469 | 18 | UGT (484) | View species results |
| Phenylpropanoid pathway | 1259 | 13 | POD (460) | View species results |
| Alkaloid pathway | 1046 | 30 | 7DLGT (246) | View species results |
| Flavonoid pathway | 799 | 16 | UFGT (341) | View species results |
| Rosmarinic acid pathway | 408 | 7 | 4CL (161) | View species results |
| Steroid pathway | 281 | 16 | CAS (195) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 4571 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 737 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| PITA_000016722-RA | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| PITA_000017579-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000017580-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000017581-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000017582-RA | Flavonoid | 4CL | low | borderline | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000018034-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000018134-RA | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| PITA_000018381-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000018735-RA | Flavonoid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| PITA_000019235-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000019774-RA | Flavonoid | 4CL | low | borderline | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000021919-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000022572-RA | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| PITA_000023184-RA | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| PITA_000023251-RA | Flavonoid | 4CL | low | borderline | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000023672-RA | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| PITA_000025400-RA | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| PITA_000026705-RA | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| PITA_000027749-RA | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| PITA_000027750-RA | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| PITA_000028138-RA | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| PITA_000030253-RA | Flavonoid | 4CL | low | borderline | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000031184-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000031291-RA | Flavonoid | 4CL | medium | pass | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| PITA_000031902-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000032526-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000033128-RA | Flavonoid | 4CL | medium | pass | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| PITA_000033152-RA | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| PITA_000036704-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000036705-RA | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| PITA_000037247-RA | Flavonoid | 4CL | medium | pass | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| PITA_000037248-RA | Flavonoid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| PITA_000038295-RA | Flavonoid | 4CL | low | borderline | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000038296-RA | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| PITA_000038396-RA | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| PITA_000038607-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000038992-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000039512-RA | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| PITA_000039543-RA | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| PITA_000039814-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000041845-RA | Flavonoid | 4CL | medium | pass | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| PITA_000042074-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000042075-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000042076-RA | Flavonoid | 4CL | low | borderline | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000042077-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000042458-RA | Flavonoid | 4CL | low | borderline | 4CL__00001__sp_I3PB36_CNL_PETHY |
| PITA_000042615-RA | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000043490-RA | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| PITA_000047041-RA | Flavonoid | 4CL | low | borderline | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| PITA_000047042-RA | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |