Pinus taeda (pinus_taeda)

This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Download candidate protein FASTA for this species

Pathway Coverage

6 Pathways

Terpenoid pathway 27.92% Phenylpropanoid pathway 23.93% Alkaloid pathway 19.88% Flavonoid pathway 15.18% Rosmarinic acid pathway 7.75% Steroid pathway 5.34%

Family Distribution

12692 Family-Level Calls

C4H 5.65% C3'H/CYP98A 5.17% UGT 4.84% 4CL 4.56% CYP76 4.22% BAHD 4.21% POD 4.18% 7DLGT 3.84%

Other Families 63.32%

More Families (98)

UFGT 426 3.36% IFS 424 3.34% TPS 369 2.91% F3H 301 2.37% DWF4/CYP90B1 292 2.3% CAD 273 2.15% GES 258 2.03% F3'H/CYP75B 253 1.99% CAS 239 1.88% BR6OX2/CYP85A2 234 1.84% G8O/G8H 232 1.83% LAC 227 1.79% T3O 208 1.64% H6H 200 1.58% IFR 189 1.49% T16H 183 1.44% CODM/T6ODM 181 1.43% IO 156 1.23% NMT 151 1.19% F3'5'H/CYP75A 138 1.09% TRI/TRII 135 1.06% SGD 134 1.06% COMT 128 1.01% HCT 118 0.93% PAL 117 0.92% STR 98 0.77% SMT1/SMT2/SMT3 98 0.77% FNS 96 0.76% F5H/CYP84A 94 0.74% PYKS 92 0.72% 8HGO 89 0.7% 7DLH 89 0.7% RAS 85 0.67% GS 84 0.66% 16OMT 80 0.63% PMT 76 0.6% SLS 75 0.59% ANR 74 0.58% HMGR 74 0.58% ANS/LDOX 73 0.58% DFR 69 0.54% CYP90D1 69 0.54% CHS 67 0.53% CCR 64 0.5% LAMT 60 0.47% NCS 59 0.46% CSE 54 0.43% TAT 50 0.39% CPD/CYP90A1 47 0.37% GGPPS 43 0.34% BR6OX1/CYP85A1 41 0.32% CYP80B1 39 0.31% ISY 38 0.3% BBE 34 0.27% CYP71 31 0.24% XMT_MXMT_DXMT 28 0.22% ADC 26 0.2% ODC 24 0.19% CHI 24 0.19% FPPS 24 0.19% CYP719 23 0.18% COR 22 0.17% 6OMT_4OMT_SOMT 19 0.15% CCoAOMT 18 0.14% ROT3/CYP90C1 18 0.14% CNMT 17 0.13% MPO 15 0.12% FLS 15 0.12% DWF1 13 0.1% DET2 12 0.09% AACT 12 0.09% CYP51G1 10 0.08% CPR 9 0.07% HDS/IspG 9 0.07% IDI 9 0.07% MVK 8 0.06% HPPR 7 0.06% DWF5 7 0.06% CYP80F1 6 0.05% CMK/IspE 6 0.05% DXS 6 0.05% TDC 4 0.03% SQS/FDFT1 4 0.03% SQE 4 0.03% HYD1 3 0.02% CPI1 3 0.02% HDR/IspH 3 0.02% HMGS 3 0.02% MVD 3 0.02% FK 2 0.02% SMO1/SMO2 2 0.02% DWF7 2 0.02% DXR 2 0.02% PMK 2 0.02% MDS/IspF 2 0.02% TYDC_DDC 1 0.01% MCT/IspD 1 0.01% GPPS 1 0.01%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Pathway-Level Records	Detected Families	Top family	Results
Terpenoid pathway	1469	18	UGT (484)	View species results
Phenylpropanoid pathway	1259	13	POD (460)	View species results
Alkaloid pathway	1046	30	7DLGT (246)	View species results
Flavonoid pathway	799	16	UFGT (341)	View species results
Rosmarinic acid pathway	408	7	4CL (161)	View species results
Steroid pathway	281	16	CAS (195)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Detected families	Assignment calls	Included families
P450/oxygenase	24	4571	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	737	BAHD, HCT, RAS

Identification Result List

Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: NMT

Protein/Isoform Record	Pathway	Family	Confidence	Status	Best Target
PITA_000069475-RA	Alkaloid	NMT	medium	borderline	NMT__00070__sp_W5U2K2_NMT_CATRO
PITA_000070580-RA	Alkaloid	NMT	medium	borderline	NMT__00043__sp_Q8H0D2_DXMT1_COFAR
PITA_000071013-RA	Alkaloid	NMT	medium	borderline	NMT__00066__sp_Q9SU94_ANM11_ARATH
PITA_000071434-RA	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
PITA_000073319-RA	Alkaloid	NMT	medium	borderline	NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
PITA_000073693-RA	Alkaloid	NMT	low	borderline	NMT__00062__sp_Q9SCP7_NAMT1_ARATH
PITA_000073708-RA	Alkaloid	NMT	low	borderline	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
PITA_000075882-RA	Alkaloid	NMT	medium	borderline	NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
PITA_000076639-RA	Alkaloid	NMT	medium	borderline	NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
PITA_000076655-RA	Alkaloid	NMT	medium	borderline	NMT__00051__sp_Q96565_AMNMT_HORVV
PITA_000076932-RA	Alkaloid	NMT	medium	borderline	NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
PITA_000078387-RA	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
PITA_000078620-RA	Alkaloid	NMT	low	borderline	NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
PITA_000079161-RA	Alkaloid	NMT	medium	borderline	NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
PITA_000079827-RA	Alkaloid	NMT	medium	borderline	NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
PITA_000081089-RA	Alkaloid	NMT	low	borderline	NMT__00062__sp_Q9SCP7_NAMT1_ARATH
PITA_000081249-RA	Alkaloid	NMT	medium	pass	NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
PITA_000081904-RA	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
PITA_000082709-RA	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
PITA_000083272-RA	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
PITA_000083299-RA	Alkaloid	NMT	medium	borderline	NMT__00010__sp_A4GE70_DXMT1_COFCA
PITA_000083300-RA	Alkaloid	NMT	medium	borderline	NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
PITA_000083301-RA	Alkaloid	NMT	medium	borderline	NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
PITA_000083458-RA	Alkaloid	NMT	low	borderline	NMT__00021__sp_O64827_SUVR5_ARATH
PITA_000083651-RA	Alkaloid	NMT	low	borderline	NMT__00011__sp_A9X7L0_ANMT_RUTGR
PITA_000084262-RA	Alkaloid	NMT	low	borderline	NMT__00036__sp_Q6K9X3_NAMT1_ORYSJ
PITA_000084721-RA	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
PITA_000084771-RA	Alkaloid	NMT	medium	borderline	NMT__00043__sp_Q8H0D2_DXMT1_COFAR
PITA_000085391-RA	Alkaloid	NMT	low	borderline	NMT__00032__sp_Q5PP37_ATXR2_ARATH
PITA_000085789-RA	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
PITA_000086969-RA	Alkaloid	NMT	low	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
PITA_000087410-RA	Alkaloid	NMT	medium	borderline	NMT__00011__sp_A9X7L0_ANMT_RUTGR
PITA_000087544-RA	Alkaloid	NMT	medium	pass	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
PITA_000088120-RA	Alkaloid	NMT	medium	borderline	NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
PITA_000089329-RA	Alkaloid	NMT	medium	borderline	NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
PITA_000090029-RA	Alkaloid	NMT	low	borderline	NMT__00066__sp_Q9SU94_ANM11_ARATH
PITA_000090933-RA	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
PITA_000090934-RA	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
PITA_000092604-RA	Alkaloid	NMT	medium	borderline	NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
PITA_000094078-RA	Alkaloid	NMT	medium	borderline	NMT__00006__sp_A0A6C0WW38_CKCS_CAMSB
PITA_000094913-RA	Alkaloid	NMT	medium	pass	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
PITA_000095021-RA	Alkaloid	NMT	medium	pass	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
PITA_000095489-RA	Alkaloid	NMT	medium	borderline	NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
PITA_000095905-RA	Alkaloid	NMT	low	borderline	NMT__00024__sp_P0CB22_ATX2_ARATH
PITA_000096669-RA	Alkaloid	NMT	medium	pass	NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
PITA_000096706-RA	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
PITAhm_000098-RA	Alkaloid	NMT	medium	borderline	NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB
PITAhm_001137-RA	Alkaloid	NMT	medium	pass	NMT__00060__sp_Q9MAT5_ANM10_ARATH
PITAhm_002650-RA	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
PITAhm_002667-RA	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH