PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

6129
Candidate Protein Records
5262
Pathway-Level Records
12692
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
PITA_000039590-RA Terpenoid CMK/IspE low borderline
PITA_000040298-RA Terpenoid CMK/IspE low borderline
5A_all_VO_L_2_T_296355/409051|m.39907.mrna1 Terpenoid CYP71 medium borderline
PITA_000001146-RA Terpenoid CYP71 low borderline
PITA_000010044-RA Terpenoid CYP71 low borderline
PITA_000013272-RA Terpenoid CYP71 low borderline
PITA_000013864-RA Terpenoid CYP71 medium pass
PITA_000019139-RA Terpenoid CYP71 medium pass
PITA_000019325-RA Terpenoid CYP71 medium pass
PITA_000021230-RA Terpenoid CYP71 low borderline
PITA_000023557-RA Terpenoid CYP71 low borderline
PITA_000032241-RA Terpenoid CYP71 medium pass
PITA_000033427-RA Terpenoid CYP71 medium pass
PITA_000039553-RA Terpenoid CYP71 medium pass
PITA_000042889-RA Terpenoid CYP71 low borderline
PITA_000043556-RA Terpenoid CYP71 low borderline
PITA_000044847-RA Terpenoid CYP71 medium borderline
PITA_000051164-RA Terpenoid CYP71 low borderline
PITA_000058529-RA Terpenoid CYP71 medium pass
PITA_000059239-RA Terpenoid CYP71 low borderline
PITA_000059993-RA Terpenoid CYP71 medium pass
PITA_000067316-RA Terpenoid CYP71 medium pass
PITA_000069430-RA Terpenoid CYP71 medium pass
PITA_000072283-RA Terpenoid CYP71 low borderline
PITA_000072521-RA Terpenoid CYP71 medium pass
PITA_000072801-RA Terpenoid CYP71 medium pass
PITA_000074012-RA Terpenoid CYP71 medium pass
PITA_000075990-RA Terpenoid CYP71 medium pass
PITA_000077662-RA Terpenoid CYP71 medium pass
PITA_000084047-RA Terpenoid CYP71 medium borderline
PITA_000084189-RA Terpenoid CYP71 medium pass
PITA_000094540-RA Terpenoid CYP71 low borderline
PITAhm_002052-RA Terpenoid CYP71 low borderline
1A_I9_VO_L_3300_T_2/93|m.12522.mrna1 Terpenoid CYP76 medium pass
1A_all_VO_L_799_T_709/713|m.1521.mrna1 Terpenoid CYP76 medium borderline
2A_I13_NT_comp39368_c0_seq8|m.19043.mrna1 Terpenoid CYP76 medium borderline
2A_I15_VO_L_3412_T_2/3|m.22314.mrna1 Terpenoid CYP76 medium borderline
2A_all_VO_L_10227_T_32/34|m.16145.mrna1 Terpenoid CYP76 medium borderline
2A_all_VO_L_20057_T_11/12|m.16808.mrna1 Terpenoid CYP76 medium borderline
3A_I16_NT_comp35193_c0_seq7|m.30475.mrna2 Terpenoid CYP76 medium borderline
3A_I18_VO_L_2_T_92301/136250|m.32841.mrna1 Terpenoid CYP76 medium borderline
3A_all_VO_L_45670_T_3/7|m.29968.mrna1 Terpenoid CYP76 medium borderline
3A_all_VO_L_45670_T_3/7|m.29968.mrna2 Terpenoid CYP76 medium borderline
5A_I15_VO_L_2583_T_52/67|m.47001.mrna1 Terpenoid CYP76 medium borderline
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna1 Terpenoid CYP76 medium borderline
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna2 Terpenoid CYP76 medium borderline
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna3 Terpenoid CYP76 medium borderline
5A_all_VO_L_146_T_102/129|m.40536.mrna1 Terpenoid CYP76 medium pass
6A_I20_VO_L_989_T_15/28|m.55970.mrna1 Terpenoid CYP76 medium borderline
6A_all_VO_L_40862_T_24/27|m.54451.mrna1 Terpenoid CYP76 medium borderline