PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

6129
Candidate Protein Records
5262
Pathway-Level Records
12692
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status Best Target
PITA_000087002-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000087003-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000087350-RA Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
PITA_000087458-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000087508-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000088080-RA Phenylpropanoid CAD low borderline CAD__00017__sp_Q9SJ25_CADH2_ARATH
PITA_000088160-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000088426-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
PITA_000089027-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000089064-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000089087-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000089092-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000089555-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000089692-RA Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
PITA_000089903-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000090552-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000090556-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000091590-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
PITA_000091771-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
PITA_000091998-RA Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
PITA_000092527-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000093114-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000093367-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000093399-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000093713-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
PITA_000093717-RA Phenylpropanoid CAD medium pass CAD__00010__sp_P48523_CADH4_ARATH
PITA_000094385-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000094405-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000094406-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000094451-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000095064-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000095208-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITA_000096163-RA Phenylpropanoid CAD low borderline CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
PITA_000096273-RA Phenylpropanoid CAD low borderline CAD__00017__sp_Q9SJ25_CADH2_ARATH
PITA_000096332-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITAhm_000380-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITAhm_000547-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITAhm_000685-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITAhm_001074-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
PITAhm_001627-RA Phenylpropanoid CAD low borderline CAD__00008__sp_O49482_CADH5_ARATH
PITAhm_001717-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
PITAhm_001752-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
PITAhm_002515-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
1A_I3_VO_L_1_T_83782/136734|m.7084.mrna1 Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
1A_I3_VO_L_1_T_83782/136734|m.7084.mrna2 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
2A_I13_VO_L_3956_T_33/40|m.20534.mrna1 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
3A_I19_VO_L_5202_T_8/25|m.35701.mrna1 Phenylpropanoid CCR medium borderline CCR__00009__sp_Q9SAH9_CCR2_ARATH
5A_I15_VO_L_41045_T_8/9|m.47402.mrna2 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000002703-RA Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000002709-RA Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY