PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

6129
Candidate Protein Records
5262
Pathway-Level Records
12692
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
PITA_000095707-RA Terpenoid FPPS medium pass
2A_I2_VO_L_733_T_145/173|m.25017.mrna1 Terpenoid GGPPS medium borderline
PITA_000002082-RA Terpenoid GGPPS medium borderline
PITA_000002738-RA Terpenoid GGPPS medium borderline
PITA_000005559-RA Terpenoid GGPPS medium borderline
PITA_000005562-RA Terpenoid GGPPS medium borderline
PITA_000010567-RA Terpenoid GGPPS medium borderline
PITA_000011830-RA Terpenoid GGPPS medium borderline
PITA_000011831-RA Terpenoid GGPPS medium borderline
PITA_000011835-RA Terpenoid GGPPS medium borderline
PITA_000011836-RA Terpenoid GGPPS medium borderline
PITA_000011838-RA Terpenoid GGPPS medium borderline
PITA_000011917-RA Terpenoid GGPPS low borderline
PITA_000015425-RA Terpenoid GGPPS medium borderline
PITA_000019172-RA Terpenoid GGPPS medium borderline
PITA_000024693-RA Terpenoid GGPPS medium borderline
PITA_000026251-RA Terpenoid GGPPS medium borderline
PITA_000026252-RA Terpenoid GGPPS medium borderline
PITA_000029849-RA Terpenoid GGPPS medium borderline
PITA_000030734-RA Terpenoid GGPPS medium borderline
PITA_000040032-RA Terpenoid GGPPS medium borderline
PITA_000043856-RA Terpenoid GGPPS medium borderline
PITA_000044165-RA Terpenoid GGPPS medium borderline
PITA_000045726-RA Terpenoid GGPPS medium borderline
PITA_000046100-RA Terpenoid GGPPS medium borderline
PITA_000047437-RA Terpenoid GGPPS medium borderline
PITA_000050482-RA Terpenoid GGPPS medium borderline
PITA_000059474-RA Terpenoid GGPPS low borderline
PITA_000060001-RA Terpenoid GGPPS medium borderline
PITA_000063078-RA Terpenoid GGPPS medium borderline
PITA_000065237-RA Terpenoid GGPPS medium borderline
PITA_000069398-RA Terpenoid GGPPS medium borderline
PITA_000071432-RA Terpenoid GGPPS medium borderline
PITA_000080427-RA Terpenoid GGPPS medium borderline
PITA_000080890-RA Terpenoid GGPPS medium borderline
PITA_000083371-RA Terpenoid GGPPS medium borderline
PITA_000087116-RA Terpenoid GGPPS medium borderline
PITA_000089577-RA Terpenoid GGPPS medium borderline
PITA_000091501-RA Terpenoid GGPPS medium borderline
PITA_000094299-RA Terpenoid GGPPS medium borderline
PITA_000095708-RA Terpenoid GGPPS medium borderline
PITA_000096187-RA Terpenoid GGPPS medium borderline
PITAhm_001991-RA Terpenoid GGPPS medium borderline
PITAhm_003208-RA Terpenoid GGPPS medium borderline
PITA_000021828-RA Terpenoid GPPS low borderline
PITA_000006352-RA Terpenoid HDR/IspH medium pass
PITA_000061538-RA Terpenoid HDR/IspH high pass
PITA_000089212-RA Terpenoid HDR/IspH medium pass
PITA_000009189-RA Terpenoid HDS/IspG medium pass
PITA_000009190-RA Terpenoid HDS/IspG low borderline