PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status Best Target
PITA_000058433-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000058849-RA Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000059213-RA Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000059214-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000059215-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000059216-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000061370-RA Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
PITA_000062509-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000062511-RA Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000062705-RA Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000064532-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000066980-RA Phenylpropanoid 4CL low borderline 4CL__00013__sp_Q84P23_4CLL9_ARATH
PITA_000067598-RA Phenylpropanoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000068327-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000068344-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000068345-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000068346-RA Phenylpropanoid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000069117-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000070000-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000070001-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000070002-RA Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
PITA_000070279-RA Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000070438-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000070705-RA Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000070990-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000071519-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000071637-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000072924-RA Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000073111-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000073413-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000073414-RA Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
PITA_000073435-RA Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
PITA_000073840-RA Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000074449-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000074780-RA Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000075207-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000075240-RA Phenylpropanoid 4CL low borderline 4CL__00018__sp_Q9S777_4CL3_ARATH
PITA_000075951-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000076005-RA Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000077716-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000077726-RA Phenylpropanoid 4CL medium pass 4CL__00018__sp_Q9S777_4CL3_ARATH
PITA_000077727-RA Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
PITA_000078974-RA Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000078975-RA Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000079158-RA Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
PITA_000080896-RA Phenylpropanoid 4CL low borderline 4CL__00013__sp_Q84P23_4CLL9_ARATH
PITA_000082501-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000082688-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000082894-RA Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
PITA_000083656-RA Phenylpropanoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH