PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status Best Target
PITA_000083657-RA Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
PITA_000083852-RA Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000084028-RA Phenylpropanoid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
PITA_000085415-RA Phenylpropanoid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU
PITA_000085427-RA Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
PITA_000085454-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000087416-RA Phenylpropanoid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
PITA_000088566-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000089614-RA Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000089865-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000089867-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000089868-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000089943-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000090205-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000091328-RA Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000091677-RA Phenylpropanoid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU
PITA_000091820-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000092156-RA Phenylpropanoid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
PITA_000093049-RA Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
PITA_000093379-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000093380-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000094206-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000094236-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000094237-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000094570-RA Phenylpropanoid 4CL low borderline 4CL__00004__sp_O24146_4CL2_TOBAC
PITA_000094572-RA Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
PITA_000094740-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000094916-RA Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000095197-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000095205-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000095211-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000095658-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000095841-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000096008-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000096053-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000096217-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000096560-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITAhm_000285-RA Phenylpropanoid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
PITAhm_001076-RA Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITAhm_001286-RA Phenylpropanoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
PITAhm_002474-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITAhm_003004-RA Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITAhm_003354-RA Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
1A_I9_VO_L_3300_T_2/93|m.12522.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline C3H_CYP98A__00001__sp_O22203_C98A3_ARATH
1A_all_VO_L_799_T_709/713|m.1521.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline C3H_CYP98A__00001__sp_O22203_C98A3_ARATH
2A_I13_NT_comp39368_c0_seq8|m.19043.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline C3H_CYP98A__00001__sp_O22203_C98A3_ARATH
2A_I15_VO_L_3412_T_2/3|m.22314.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline C3H_CYP98A__00001__sp_O22203_C98A3_ARATH
2A_all_VO_L_10227_T_32/34|m.16145.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline C3H_CYP98A__00001__sp_O22203_C98A3_ARATH
2A_all_VO_L_20057_T_11/12|m.16808.mrna1 Phenylpropanoid C3'H/CYP98A medium borderline C3H_CYP98A__00001__sp_O22203_C98A3_ARATH
3A_I16_NT_comp35193_c0_seq7|m.30475.mrna2 Phenylpropanoid C3'H/CYP98A medium borderline C3H_CYP98A__00001__sp_O22203_C98A3_ARATH