PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

6129
Candidate Protein Records
5262
Pathway-Level Records
12692
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
PITA_000050316-RA Alkaloid GS low borderline
PITA_000050501-RA Alkaloid GS low borderline
PITA_000054708-RA Alkaloid GS low borderline
PITA_000056855-RA Alkaloid GS low borderline
PITA_000059323-RA Alkaloid GS medium pass
PITA_000060339-RA Alkaloid GS low borderline
PITA_000062580-RA Alkaloid GS high pass
PITA_000066256-RA Alkaloid GS medium pass
PITA_000069265-RA Alkaloid GS low borderline
PITA_000069516-RA Alkaloid GS low borderline
PITA_000069588-RA Alkaloid GS low borderline
PITA_000069728-RA Alkaloid GS low borderline
PITA_000071085-RA Alkaloid GS low borderline
PITA_000073360-RA Alkaloid GS low borderline
PITA_000074244-RA Alkaloid GS medium pass
PITA_000075051-RA Alkaloid GS high pass
PITA_000076262-RA Alkaloid GS low borderline
PITA_000076954-RA Alkaloid GS low borderline
PITA_000076974-RA Alkaloid GS medium pass
PITA_000078756-RA Alkaloid GS low borderline
PITA_000081016-RA Alkaloid GS medium pass
PITA_000081367-RA Alkaloid GS medium pass
PITA_000083259-RA Alkaloid GS high pass
PITA_000083432-RA Alkaloid GS low borderline
PITA_000084285-RA Alkaloid GS medium pass
PITA_000087350-RA Alkaloid GS medium pass
PITA_000089402-RA Alkaloid GS low borderline
PITA_000091998-RA Alkaloid GS low borderline
PITA_000093414-RA Alkaloid GS medium pass
PITA_000093415-RA Alkaloid GS low borderline
PITA_000095859-RA Alkaloid GS medium pass
PITA_000096163-RA Alkaloid GS low borderline
PITA_000096273-RA Alkaloid GS low borderline
PITA_000096413-RA Alkaloid GS medium pass
PITAhm_001088-RA Alkaloid GS low borderline
PITAhm_001627-RA Alkaloid GS low borderline
PITAhm_002298-RA Alkaloid GS low borderline
1A_I3_VO_L_4658_T_21/46|m.8142.mrna1 Alkaloid H6H medium borderline
1A_I5_VO_L_6720_T_12/20|m.10219.mrna1 Alkaloid H6H medium borderline
2A_I4_VO_L_1_T_88908/124638|m.26552.mrna1 Alkaloid H6H medium borderline
5A_I13_VO_L_1332_T_13/14|m.44452.mrna2 Alkaloid H6H medium borderline
5A_all_VO_L_2_T_137289/409051|m.39027.mrna4 Alkaloid H6H low borderline
6A_I23_NT_comp43693_c0_seq21|m.58647.mrna1 Alkaloid H6H medium borderline
PITA_000000240-RA Alkaloid H6H medium pass
PITA_000001395-RA Alkaloid H6H medium borderline
PITA_000001582-RA Alkaloid H6H medium borderline
PITA_000002515-RA Alkaloid H6H low borderline
PITA_000002528-RA Alkaloid H6H low borderline
PITA_000002529-RA Alkaloid H6H low borderline
PITA_000003535-RA Alkaloid H6H high pass