PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
PITA_000083657-RA Rosmarinic Acid 4CL medium pass
PITA_000083852-RA Rosmarinic Acid 4CL low borderline
PITA_000084028-RA Rosmarinic Acid 4CL medium pass
PITA_000085415-RA Rosmarinic Acid 4CL medium pass
PITA_000085427-RA Rosmarinic Acid 4CL medium pass
PITA_000085454-RA Rosmarinic Acid 4CL medium pass
PITA_000087416-RA Rosmarinic Acid 4CL medium pass
PITA_000088566-RA Rosmarinic Acid 4CL medium pass
PITA_000089614-RA Rosmarinic Acid 4CL medium pass
PITA_000089865-RA Rosmarinic Acid 4CL medium pass
PITA_000089867-RA Rosmarinic Acid 4CL medium pass
PITA_000089868-RA Rosmarinic Acid 4CL medium pass
PITA_000089943-RA Rosmarinic Acid 4CL medium pass
PITA_000090205-RA Rosmarinic Acid 4CL medium pass
PITA_000091328-RA Rosmarinic Acid 4CL medium pass
PITA_000091677-RA Rosmarinic Acid 4CL medium pass
PITA_000091820-RA Rosmarinic Acid 4CL medium pass
PITA_000092156-RA Rosmarinic Acid 4CL medium pass
PITA_000093049-RA Rosmarinic Acid 4CL medium pass
PITA_000093379-RA Rosmarinic Acid 4CL medium pass
PITA_000093380-RA Rosmarinic Acid 4CL medium pass
PITA_000094206-RA Rosmarinic Acid 4CL medium pass
PITA_000094236-RA Rosmarinic Acid 4CL medium pass
PITA_000094237-RA Rosmarinic Acid 4CL medium pass
PITA_000094570-RA Rosmarinic Acid 4CL low borderline
PITA_000094572-RA Rosmarinic Acid 4CL medium pass
PITA_000094740-RA Rosmarinic Acid 4CL medium pass
PITA_000094916-RA Rosmarinic Acid 4CL medium pass
PITA_000095197-RA Rosmarinic Acid 4CL medium pass
PITA_000095205-RA Rosmarinic Acid 4CL medium pass
PITA_000095211-RA Rosmarinic Acid 4CL medium pass
PITA_000095658-RA Rosmarinic Acid 4CL medium pass
PITA_000095841-RA Rosmarinic Acid 4CL medium pass
PITA_000096008-RA Rosmarinic Acid 4CL medium pass
PITA_000096053-RA Rosmarinic Acid 4CL medium pass
PITA_000096217-RA Rosmarinic Acid 4CL medium pass
PITA_000096560-RA Rosmarinic Acid 4CL medium pass
PITAhm_000285-RA Rosmarinic Acid 4CL low borderline
PITAhm_001076-RA Rosmarinic Acid 4CL medium pass
PITAhm_001286-RA Rosmarinic Acid 4CL low borderline
PITAhm_002474-RA Rosmarinic Acid 4CL medium pass
PITAhm_003004-RA Rosmarinic Acid 4CL medium pass
PITAhm_003354-RA Rosmarinic Acid 4CL medium pass
1A_I9_VO_L_3300_T_2/93|m.12522.mrna1 Rosmarinic Acid C4H low borderline
1A_all_VO_L_799_T_709/713|m.1521.mrna1 Rosmarinic Acid C4H medium pass
2A_I13_NT_comp39368_c0_seq8|m.19043.mrna1 Rosmarinic Acid C4H medium pass
2A_I15_VO_L_3412_T_2/3|m.22314.mrna1 Rosmarinic Acid C4H medium pass
2A_all_VO_L_10227_T_32/34|m.16145.mrna1 Rosmarinic Acid C4H medium pass
2A_all_VO_L_20057_T_11/12|m.16808.mrna1 Rosmarinic Acid C4H low borderline
3A_I16_NT_comp35193_c0_seq7|m.30475.mrna2 Rosmarinic Acid C4H medium pass