PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

6129
Candidate Protein Records
5262
Pathway-Level Records
12692
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
3A_I18_VO_L_2_T_92301/136250|m.32841.mrna1 Rosmarinic Acid C4H low borderline
3A_all_VO_L_45670_T_3/7|m.29968.mrna1 Rosmarinic Acid C4H low borderline
3A_all_VO_L_45670_T_3/7|m.29968.mrna2 Rosmarinic Acid C4H low borderline
5A_I15_VO_L_2583_T_52/67|m.47001.mrna1 Rosmarinic Acid C4H low borderline
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna1 Rosmarinic Acid C4H low borderline
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna2 Rosmarinic Acid C4H low borderline
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna3 Rosmarinic Acid C4H low borderline
5A_all_NT_comp98714_c0_seq3|m.38113.mrna1 Rosmarinic Acid C4H low borderline
5A_all_VO_L_146_T_102/129|m.40536.mrna1 Rosmarinic Acid C4H low borderline
5A_all_VO_L_2_T_296355/409051|m.39907.mrna1 Rosmarinic Acid C4H low borderline
6A_I20_VO_L_989_T_15/28|m.55970.mrna1 Rosmarinic Acid C4H medium pass
6A_all_VO_L_40862_T_24/27|m.54451.mrna1 Rosmarinic Acid C4H low borderline
PITA_000000196-RA Rosmarinic Acid C4H low borderline
PITA_000000241-RA Rosmarinic Acid C4H medium pass
PITA_000000461-RA Rosmarinic Acid C4H low borderline
PITA_000000462-RA Rosmarinic Acid C4H low borderline
PITA_000000685-RA Rosmarinic Acid C4H medium pass
PITA_000000727-RA Rosmarinic Acid C4H low borderline
PITA_000000734-RA Rosmarinic Acid C4H low borderline
PITA_000000899-RA Rosmarinic Acid C4H medium pass
PITA_000000975-RA Rosmarinic Acid C4H low borderline
PITA_000001426-RA Rosmarinic Acid C4H low borderline
PITA_000002570-RA Rosmarinic Acid C4H low borderline
PITA_000002885-RA Rosmarinic Acid C4H medium pass
PITA_000004257-RA Rosmarinic Acid C4H low borderline
PITA_000004396-RA Rosmarinic Acid C4H low borderline
PITA_000004869-RA Rosmarinic Acid C4H low borderline
PITA_000004870-RA Rosmarinic Acid C4H medium pass
PITA_000004872-RA Rosmarinic Acid C4H low borderline
PITA_000005612-RA Rosmarinic Acid C4H low borderline
PITA_000006071-RA Rosmarinic Acid C4H low borderline
PITA_000006776-RA Rosmarinic Acid C4H low borderline
PITA_000006872-RA Rosmarinic Acid C4H low borderline
PITA_000006873-RA Rosmarinic Acid C4H low borderline
PITA_000006874-RA Rosmarinic Acid C4H low borderline
PITA_000007062-RA Rosmarinic Acid C4H low borderline
PITA_000007064-RA Rosmarinic Acid C4H low borderline
PITA_000007203-RA Rosmarinic Acid C4H low borderline
PITA_000007204-RA Rosmarinic Acid C4H low borderline
PITA_000007289-RA Rosmarinic Acid C4H low borderline
PITA_000007688-RA Rosmarinic Acid C4H low borderline
PITA_000007754-RA Rosmarinic Acid C4H low borderline
PITA_000007756-RA Rosmarinic Acid C4H low borderline
PITA_000007971-RA Rosmarinic Acid C4H low borderline
PITA_000007972-RA Rosmarinic Acid C4H medium pass
PITA_000007978-RA Rosmarinic Acid C4H low borderline
PITA_000007980-RA Rosmarinic Acid C4H low borderline
PITA_000008353-RA Rosmarinic Acid C4H low borderline
PITA_000008620-RA Rosmarinic Acid C4H medium pass
PITA_000008622-RA Rosmarinic Acid C4H medium pass