PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

6129
Candidate Protein Records
5262
Pathway-Level Records
12692
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
PITAhm_000043-RA Rosmarinic Acid C4H medium pass
PITAhm_000291-RA Rosmarinic Acid C4H low borderline
PITAhm_000305-RA Rosmarinic Acid C4H medium pass
PITAhm_000366-RA Rosmarinic Acid C4H low borderline
PITAhm_000494-RA Rosmarinic Acid C4H low borderline
PITAhm_000578-RA Rosmarinic Acid C4H medium pass
PITAhm_001091-RA Rosmarinic Acid C4H medium pass
PITAhm_001182-RA Rosmarinic Acid C4H medium pass
PITAhm_001415-RA Rosmarinic Acid C4H low borderline
PITAhm_001669-RA Rosmarinic Acid C4H low borderline
PITAhm_002308-RA Rosmarinic Acid C4H low borderline
PITAhm_002517-RA Rosmarinic Acid C4H low borderline
PITAhm_002965-RA Rosmarinic Acid C4H low borderline
PITAhm_003161-RA Rosmarinic Acid C4H medium pass
PITAhm_003318-RA Rosmarinic Acid C4H low borderline
PITA_000007875-RA Rosmarinic Acid CPR medium pass
PITA_000018586-RA Rosmarinic Acid CPR medium pass
PITA_000043913-RA Rosmarinic Acid CPR medium pass
PITA_000050904-RA Rosmarinic Acid CPR medium pass
PITA_000074114-RA Rosmarinic Acid CPR low borderline
PITA_000085104-RA Rosmarinic Acid CPR medium pass
PITA_000096496-RA Rosmarinic Acid CPR medium pass
PITAhm_000379-RA Rosmarinic Acid CPR medium pass
PITAhm_002907-RA Rosmarinic Acid CPR medium pass
6A_I20_VO_L_3445_T_6/7|m.56171.mrna2 Rosmarinic Acid HPPR medium pass
PITA_000005283-RA Rosmarinic Acid HPPR medium pass
PITA_000014166-RA Rosmarinic Acid HPPR medium pass
PITA_000027673-RA Rosmarinic Acid HPPR medium pass
PITA_000063399-RA Rosmarinic Acid HPPR medium pass
PITA_000078165-RA Rosmarinic Acid HPPR medium pass
PITA_000095510-RA Rosmarinic Acid HPPR medium pass
5A_I7_VO_L_34327_T_10/19|m.51437.mrna1 Rosmarinic Acid PAL low borderline
PITA_000002303-RA Rosmarinic Acid PAL high pass
PITA_000002304-RA Rosmarinic Acid PAL high pass
PITA_000005593-RA Rosmarinic Acid PAL high pass
PITA_000005594-RA Rosmarinic Acid PAL high pass
PITA_000015525-RA Rosmarinic Acid PAL high pass
PITA_000029467-RA Rosmarinic Acid PAL low borderline
PITA_000029579-RA Rosmarinic Acid PAL medium pass
PITA_000038676-RA Rosmarinic Acid PAL high pass
PITA_000041078-RA Rosmarinic Acid PAL high pass
PITA_000047220-RA Rosmarinic Acid PAL low borderline
PITA_000047899-RA Rosmarinic Acid PAL low borderline
PITA_000049303-RA Rosmarinic Acid PAL low borderline
PITA_000056344-RA Rosmarinic Acid PAL low borderline
PITA_000057642-RA Rosmarinic Acid PAL high pass
PITA_000064080-RA Rosmarinic Acid PAL low borderline
PITA_000065366-RA Rosmarinic Acid PAL high pass
PITA_000067816-RA Rosmarinic Acid PAL low borderline
PITA_000072028-RA Rosmarinic Acid PAL low borderline