Brassica carinata (brassica_carinata)

This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Download candidate protein FASTA for this species

Pathway Coverage

6 Pathways

Terpenoid pathway 29.48% Alkaloid pathway 22.81% Phenylpropanoid pathway 21.11% Flavonoid pathway 10.69% Rosmarinic acid pathway 8.78% Steroid pathway 7.12%

Family Distribution

12342 Family-Level Calls

BAHD 6.45% C3'H/CYP98A 6.11% C4H 6.07% POD 4.08% 4CL 4.04% CYP76 3.92% IFS 3.77% F3H 3.13%

Other Families 62.45%

More Families (98)

T3O 379 3.07% UGT 355 2.88% NMT 328 2.66% DWF4/CYP90B1 322 2.61% 7DLGT 318 2.58% UFGT 318 2.58% CODM/T6ODM 249 2.02% BR6OX2/CYP85A2 231 1.87% SGD 222 1.8% STR 219 1.77% F3'H/CYP75B 213 1.73% SMT1/SMT2/SMT3 200 1.62% H6H 193 1.56% CYP71 180 1.46% TRI/TRII 171 1.39% CSE 147 1.19% PYKS 136 1.1% CAD 121 0.98% CAS 118 0.96% T16H 112 0.91% SLS 111 0.9% LAC 109 0.88% FNS 107 0.87% BBE 106 0.86% COMT 106 0.86% IFR 105 0.85% IO 99 0.8% TPS 98 0.79% CYP90D1 96 0.78% RAS 95 0.77% ANR 89 0.72% GES 87 0.7% PAL 87 0.7% TAT 83 0.67% LAMT 79 0.64% G8O/G8H 78 0.63% F3'5'H/CYP75A 72 0.58% 16OMT 68 0.55% F5H/CYP84A 67 0.54% GS 66 0.53% HCT 65 0.53% CCR 60 0.49% CPD/CYP90A1 56 0.45% 8HGO 54 0.44% 7DLH 52 0.42% ANS/LDOX 52 0.42% CYP51G1 52 0.42% CPR 48 0.39% COR 47 0.38% BR6OX1/CYP85A1 47 0.38% GGPPS 41 0.33% NCS 40 0.32% CHS 38 0.31% SQE 37 0.3% HMGR 36 0.29% PMT 33 0.27% FPPS 33 0.27% CCoAOMT 30 0.24% SQS/FDFT1 26 0.21% AACT 26 0.21% MPO 25 0.2% ROT3/CYP90C1 24 0.19% MVD 24 0.19% CYP80B1 23 0.19% CNMT 22 0.18% SMO1/SMO2 22 0.18% DFR 20 0.16% DWF7 20 0.16% MVK 20 0.16% ISY 18 0.15% TYDC_DDC 18 0.15% XMT_MXMT_DXMT 17 0.14% FLS 17 0.14% CYP80F1 16 0.13% HPPR 16 0.13% ADC 13 0.11% DWF1 13 0.11% DXS 13 0.11% TDC 12 0.1% HYD1 12 0.1% IDI 12 0.1% PMK 12 0.1% CHI 11 0.09% DET2 11 0.09% MCT/IspD 11 0.09% CYP719 8 0.06% 6OMT_4OMT_SOMT 8 0.06% HDR/IspH 8 0.06% DWF5 7 0.06% HDS/IspG 7 0.06% CPI1 6 0.05% FK 6 0.05% HMGS 5 0.04% DXR 5 0.04% GPPS 4 0.03% MDS/IspF 4 0.03% CMK/IspE 3 0.02% ODC 1 0.01%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Pathway-Level Records	Detected Families	Top family	Results
Terpenoid pathway	1437	22	BAHD (647)	View species results
Alkaloid pathway	1112	25	SGD (196)	View species results
Phenylpropanoid pathway	1029	12	POD (460)	View species results
Flavonoid pathway	521	13	UFGT (304)	View species results
Rosmarinic acid pathway	428	7	C4H (169)	View species results
Steroid pathway	347	14	SMT1/SMT2/SMT3 (126)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Detected families	Assignment calls	Included families
P450/oxygenase	24	4690	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	956	BAHD, HCT, RAS

Identification Result List

Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.

Protein/Isoform Record	Pathway	Family	Confidence	Status	Best Target
Bca_GomC04g37540.mRNA1	Alkaloid	NMT	medium	borderline	NMT__00062__sp_Q9SCP7_NAMT1_ARATH
Bca_GomC04g38660.mRNA1	Alkaloid	NMT	low	borderline	NMT__00057__sp_Q9FR44_PEAM1_ARATH
Bca_GomC04g53280.mRNA1	Alkaloid	NMT	medium	pass	NMT__00024__sp_P0CB22_ATX2_ARATH
Bca_GomC04g54690.mRNA1	Alkaloid	NMT	medium	pass	NMT__00019__sp_O22781_SUVH2_ARATH
Bca_GomC04g56590.mRNA1	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Bca_GomC04g57970.mRNA1	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Bca_GomC05g03580.mRNA1	Alkaloid	NMT	medium	pass	NMT__00022__sp_O65312_MEDEA_ARATH
Bca_GomC05g15490.mRNA1	Alkaloid	NMT	medium	pass	NMT__00068__sp_Q9XI84_RBCMT_ARATH
Bca_GomC05g16920.mRNA1	Alkaloid	NMT	medium	pass	NMT__00039__sp_Q84W92_ANM13_ARATH
Bca_GomC05g20140.mRNA1	Alkaloid	NMT	low	borderline	NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomC05g20150.mRNA1	Alkaloid	NMT	medium	pass	NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomC05g20160.mRNA2	Alkaloid	NMT	medium	pass	NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomC05g20170.mRNA1	Alkaloid	NMT	medium	pass	NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomC05g20190.mRNA1	Alkaloid	NMT	medium	pass	NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomC05g20200.mRNA1	Alkaloid	NMT	medium	pass	NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomC05g20210.mRNA1	Alkaloid	NMT	low	borderline	NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomC05g22400.mRNA1	Alkaloid	NMT	medium	borderline	NMT__00058__sp_Q9FZN8_TCS1_CAMSI
Bca_GomC05g23120.mRNA1	Alkaloid	NMT	medium	borderline	NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Bca_GomC05g23580.mRNA1	Alkaloid	NMT	medium	borderline	NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Bca_GomC05g37410.mRNA1	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Bca_GomC05g42570.mRNA1	Alkaloid	NMT	medium	pass	NMT__00032__sp_Q5PP37_ATXR2_ARATH
Bca_GomC05g45300.mRNA1	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
Bca_GomC05g47170.mRNA1	Alkaloid	NMT	medium	borderline	NMT__00057__sp_Q9FR44_PEAM1_ARATH
Bca_GomC05g50880.mRNA1	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Bca_GomC05g54230.mRNA1	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
Bca_GomC05g54530.mRNA1	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
Bca_GomC05g58130.mRNA1	Alkaloid	NMT	medium	pass	NMT__00039__sp_Q84W92_ANM13_ARATH
Bca_GomC06g11420.mRNA1	Alkaloid	NMT	medium	borderline	NMT__00050__sp_Q944H0_PEAM2_ARATH
Bca_GomC06g13350.mRNA1	Alkaloid	NMT	medium	pass	NMT__00020__sp_O23372_ATXR3_ARATH
Bca_GomC06g30890.mRNA1	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Bca_GomC06g32100.mRNA2	Alkaloid	NMT	low	borderline	NMT__00024__sp_P0CB22_ATX2_ARATH
Bca_GomC06g35610.mRNA1	Alkaloid	NMT	medium	pass	NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Bca_GomC06g36110.mRNA1	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Bca_GomC06g38120.mRNA1	Alkaloid	NMT	medium	borderline	NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Bca_GomC06g38410.mRNA1	Alkaloid	NMT	medium	pass	NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomC06g38670.mRNA1	Alkaloid	NMT	medium	pass	NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomC06g44170.mRNA1	Alkaloid	NMT	low	borderline	NMT__00006__sp_A0A6C0WW38_CKCS_CAMSB
Bca_GomC06g45150.mRNA1	Alkaloid	NMT	low	borderline	NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomC06g45730.mRNA1	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Bca_GomC06g50920.mRNA1	Alkaloid	NMT	medium	pass	NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomC06g51300.mRNA1	Alkaloid	NMT	medium	pass	NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Bca_GomC06g54370.mRNA1	Alkaloid	NMT	medium	borderline	NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Bca_GomC06g55100.mRNA1	Alkaloid	NMT	medium	pass	NMT__00040__sp_Q84WW6_ASHH1_ARATH
Bca_GomC06g55520.mRNA1	Alkaloid	NMT	medium	pass	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Bca_GomC07g04390.mRNA1	Alkaloid	NMT	medium	pass	NMT__00023__sp_O82210_ANM12_ARATH
Bca_GomC07g07390.mRNA1	Alkaloid	NMT	low	borderline	NMT__00032__sp_Q5PP37_ATXR2_ARATH
Bca_GomC07g17150.mRNA1	Alkaloid	NMT	medium	pass	NMT__00020__sp_O23372_ATXR3_ARATH
Bca_GomC07g25480.mRNA1	Alkaloid	NMT	medium	borderline	NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
Bca_GomC07g27960.mRNA1	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Bca_GomC07g28250.mRNA1	Alkaloid	NMT	low	borderline	NMT__00045__sp_Q8VYX1_PEAM1_WHEAT