PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
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Gene Pathway Family Confidence Status
Bca_GomB01g07140.mRNA1 Flavonoid CHS medium pass
Bca_GomB02g102690.mRNA1 Flavonoid CHS medium pass
Bca_GomB02g106920.mRNA1 Flavonoid CHS medium pass
Bca_GomB02g27830.mRNA1 Flavonoid CHS medium pass
Bca_GomB02g44680.mRNA1 Flavonoid CHS medium pass
Bca_GomB02g95890.mRNA1 Flavonoid CHS medium pass
Bca_GomB02g96740.mRNA1 Flavonoid CHS medium pass
Bca_GomB03g23830.mRNA1 Flavonoid CHS medium pass
Bca_GomB03g28700.mRNA1 Flavonoid CHS medium pass
Bca_GomB04g16930.mRNA1 Flavonoid CHS medium pass
Bca_GomB04g17260.mRNA1 Flavonoid CHS medium pass
Bca_GomB05g14220.mRNA1 Flavonoid CHS medium pass
Bca_GomB05g14300.mRNA1 Flavonoid CHS medium pass
Bca_GomB05g14440.mRNA1 Flavonoid CHS medium pass
Bca_GomB05g39610.mRNA1 Flavonoid CHS medium pass
Bca_GomB05g39620.mRNA1 Flavonoid CHS low borderline
Bca_GomB05g45450.mRNA1 Flavonoid CHS low borderline
Bca_GomB08g10500.mRNA1 Flavonoid CHS medium pass
Bca_GomB08g54930.mRNA1 Flavonoid CHS medium pass
Bca_GomB08g55990.mRNA1 Flavonoid CHS medium pass
Bca_GomC01g07390.mRNA1 Flavonoid CHS medium pass
Bca_GomC02g53880.mRNA1 Flavonoid CHS medium pass
Bca_GomC02g53890.mRNA1 Flavonoid CHS medium pass
Bca_GomC03g13360.mRNA1 Flavonoid CHS medium pass
Bca_GomC03g36520.mRNA1 Flavonoid CHS medium pass
Bca_GomC03g38300.mRNA1 Flavonoid CHS medium pass
Bca_GomC04g58990.mRNA1 Flavonoid CHS medium pass
Bca_GomC04g59090.mRNA1 Flavonoid CHS medium pass
Bca_GomC04g59180.mRNA1 Flavonoid CHS medium pass
Bca_GomC08g67380.mRNA1 Flavonoid CHS low borderline
Bca_GomC08g67390.mRNA1 Flavonoid CHS low borderline
Bca_GomC09g03770.mRNA1 Flavonoid CHS medium pass
Bca_GomC09g03780.mRNA1 Flavonoid CHS medium pass
Bca_GomC09g04060.mRNA1 Flavonoid CHS medium pass
Bca_GomC09g50950.mRNA1 Flavonoid CHS medium pass
Bca_GomC09g51050.mRNA1 Flavonoid CHS medium pass
Bca_GomC09g51460.mRNA1 Flavonoid CHS medium pass
Bca_GomC09g51470.mRNA1 Flavonoid CHS low borderline