PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status
Bca_GomB02g16670.mRNA1 Alkaloid COR medium pass
Bca_GomB02g16730.mRNA1 Alkaloid COR medium pass
Bca_GomB03g87210.mRNA1 Alkaloid COR medium pass
Bca_GomB04g04390.mRNA1 Alkaloid COR medium pass
Bca_GomB04g11610.mRNA1 Alkaloid COR medium pass
Bca_GomB04g12830.mRNA1 Alkaloid COR medium pass
Bca_GomB04g35260.mRNA1 Alkaloid COR medium pass
Bca_GomB04g35540.mRNA1 Alkaloid COR medium pass
Bca_GomB06g20470.mRNA1 Alkaloid COR medium pass
Bca_GomB06g20480.mRNA1 Alkaloid COR medium pass
Bca_GomB06g20490.mRNA1 Alkaloid COR low borderline
Bca_GomB06g20500.mRNA1 Alkaloid COR low borderline
Bca_GomB06g21640.mRNA1 Alkaloid COR medium pass
Bca_GomB06g21650.mRNA1 Alkaloid COR medium pass
Bca_GomB06g21680.mRNA1 Alkaloid COR medium pass
Bca_GomB06g21690.mRNA1 Alkaloid COR medium pass
Bca_GomB06g21700.mRNA1 Alkaloid COR medium pass
Bca_GomB06g21710.mRNA1 Alkaloid COR medium pass
Bca_GomB06g21720.mRNA1 Alkaloid COR medium pass
Bca_GomB06g21740.mRNA1 Alkaloid COR medium pass
Bca_GomB06g21750.mRNA1 Alkaloid COR medium pass
Bca_GomB06g21760.mRNA1 Alkaloid COR medium pass
Bca_GomB06g25720.mRNA1 Alkaloid COR medium pass
Bca_GomB07g63010.mRNA1 Alkaloid COR medium pass
Bca_GomB08g05950.mRNA1 Alkaloid COR medium pass
Bca_GomB08g31340.mRNA1 Alkaloid COR medium pass
Bca_GomB08g31350.mRNA1 Alkaloid COR medium pass
Bca_GomB08g31780.mRNA1 Alkaloid COR medium pass
Bca_GomB08g84060.mRNA1 Alkaloid COR medium pass
Bca_GomB08g84770.mRNA1 Alkaloid COR medium pass
Bca_GomC03g07790.mRNA1 Alkaloid COR medium pass
Bca_GomC03g26610.mRNA1 Alkaloid COR low borderline
Bca_GomC03g28670.mRNA1 Alkaloid COR medium pass
Bca_GomC03g28680.mRNA1 Alkaloid COR medium pass
Bca_GomC03g28690.mRNA1 Alkaloid COR medium pass
Bca_GomC03g66220.mRNA1 Alkaloid COR medium pass
Bca_GomC04g10900.mRNA1 Alkaloid COR medium pass
Bca_GomC04g10920.mRNA1 Alkaloid COR medium pass
Bca_GomC04g10930.mRNA1 Alkaloid COR medium pass
Bca_GomC04g10940.mRNA1 Alkaloid COR medium pass
Bca_GomC04g44680.mRNA1 Alkaloid COR medium pass
Bca_GomC06g12600.mRNA1 Alkaloid COR low borderline
Bca_GomC06g37830.mRNA1 Alkaloid COR low borderline
Bca_GomC07g17300.mRNA2 Alkaloid COR low borderline
Bca_GomC07g72170.mRNA1 Alkaloid COR medium pass
Bca_GomC08g35800.mRNA1 Alkaloid COR medium pass
Bca_GomC08g35840.mRNA1 Alkaloid COR medium pass