PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status Best Target
Bca_GomB01g03790.mRNA1 Phenylpropanoid CCR medium pass CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Bca_GomB01g11640.mRNA1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Bca_GomB01g21160.mRNA1 Phenylpropanoid CCR medium pass CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Bca_GomB01g32440.mRNA1 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Bca_GomB01g74810.mRNA1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Bca_GomB01g75390.mRNA1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Bca_GomB02g102500.mRNA1 Phenylpropanoid CCR low borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
Bca_GomB02g39870.mRNA1 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Bca_GomB02g44150.mRNA1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Bca_GomB02g92010.mRNA1 Phenylpropanoid CCR medium pass CCR__00009__sp_Q9SAH9_CCR2_ARATH
Bca_GomB03g35530.mRNA1 Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
Bca_GomB03g35800.mRNA1 Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
Bca_GomB03g53360.mRNA1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Bca_GomB03g58480.mRNA1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Bca_GomB03g69200.mRNA1 Phenylpropanoid CCR medium borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
Bca_GomB03g90130.mRNA1 Phenylpropanoid CCR medium borderline CCR__00009__sp_Q9SAH9_CCR2_ARATH
Bca_GomB03g92770.mRNA1 Phenylpropanoid CCR medium borderline CCR__00009__sp_Q9SAH9_CCR2_ARATH
Bca_GomB04g03130.mRNA1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Bca_GomB04g22060.mRNA1 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Bca_GomB04g22370.mRNA1 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Bca_GomB04g51120.mRNA1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Bca_GomB04g51130.mRNA1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Bca_GomB04g71560.mRNA1 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Bca_GomB05g38700.mRNA1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Bca_GomB05g39200.mRNA1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Bca_GomB05g39300.mRNA1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Bca_GomB06g13000.mRNA1 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Bca_GomB06g16750.mRNA1 Phenylpropanoid CCR medium borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
Bca_GomB06g16810.mRNA1 Phenylpropanoid CCR low borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
Bca_GomB06g16820.mRNA1 Phenylpropanoid CCR medium borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
Bca_GomB06g16920.mRNA1 Phenylpropanoid CCR low borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
Bca_GomB06g81980.mRNA1 Phenylpropanoid CCR medium borderline CCR__00009__sp_Q9SAH9_CCR2_ARATH
Bca_GomC01g06870.mRNA1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Bca_GomC02g08140.mRNA1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Bca_GomC02g09060.mRNA1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Bca_GomC02g29470.mRNA1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Bca_GomC02g48010.mRNA1 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Bca_GomC03g36910.mRNA1 Phenylpropanoid CCR low borderline CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Bca_GomC03g83170.mRNA1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Bca_GomC04g05200.mRNA1 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Bca_GomC04g07380.mRNA1 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Bca_GomC04g47300.mRNA1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Bca_GomC04g55010.mRNA1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Bca_GomC04g64290.mRNA1 Phenylpropanoid CCR medium borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
Bca_GomC05g18070.mRNA1 Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
Bca_GomC05g18510.mRNA1 Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
Bca_GomC05g29200.mRNA1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Bca_GomC06g12770.mRNA2 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Bca_GomC06g42010.mRNA1 Phenylpropanoid CCR medium pass CCR__00007__sp_Q9CA28_TKPR2_ARATH
Bca_GomC06g46110.mRNA1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH