PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: MVD
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Gene Pathway Family Confidence Status
Bca_GomB01g15190.mRNA1 Terpenoid MVD low borderline
Bca_GomB01g51710.mRNA1 Terpenoid MVD low borderline
Bca_GomB02g28750.mRNA1 Terpenoid MVD low borderline
Bca_GomB02g52140.mRNA1 Terpenoid MVD low borderline
Bca_GomB02g52460.mRNA1 Terpenoid MVD low borderline
Bca_GomB02g52670.mRNA1 Terpenoid MVD low borderline
Bca_GomB03g11010.mRNA1 Terpenoid MVD low borderline
Bca_GomB03g11420.mRNA1 Terpenoid MVD low borderline
Bca_GomB05g07070.mRNA1 Terpenoid MVD low borderline
Bca_GomB05g45250.mRNA1 Terpenoid MVD low borderline
Bca_GomB06g55410.mRNA1 Terpenoid MVD low borderline
Bca_GomB06g56290.mRNA1 Terpenoid MVD low borderline
Bca_GomB06g80340.mRNA1 Terpenoid MVD medium pass
Bca_GomB08g04150.mRNA1 Terpenoid MVD low borderline
Bca_GomB08g85020.mRNA1 Terpenoid MVD medium pass
Bca_GomC02g03340.mRNA1 Terpenoid MVD low borderline
Bca_GomC02g03540.mRNA1 Terpenoid MVD low borderline
Bca_GomC03g09560.mRNA1 Terpenoid MVD low borderline
Bca_GomC03g09820.mRNA1 Terpenoid MVD low borderline
Bca_GomC04g36180.mRNA1 Terpenoid MVD medium pass
Bca_GomC05g19310.mRNA1 Terpenoid MVD low borderline
Bca_GomC07g34340.mRNA1 Terpenoid MVD low borderline
Bca_GomC08g26620.mRNA1 Terpenoid MVD low borderline
Bca_GomC08g36100.mRNA2 Terpenoid MVD low borderline