PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SQE
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Gene Pathway Family Confidence Status
Bca_GomB01g22110.mRNA1 Steroid SQE medium pass
Bca_GomB01g22800.mRNA1 Steroid SQE medium pass
Bca_GomB01g71880.mRNA1 Steroid SQE medium pass
Bca_GomB02g15750.mRNA1 Steroid SQE medium pass
Bca_GomB02g81750.mRNA1 Steroid SQE medium pass
Bca_GomB04g12430.mRNA1 Steroid SQE medium pass
Bca_GomB04g13860.mRNA2 Steroid SQE medium pass
Bca_GomB04g13870.mRNA1 Steroid SQE medium pass
Bca_GomB04g13880.mRNA1 Steroid SQE medium pass
Bca_GomB04g13890.mRNA1 Steroid SQE medium pass
Bca_GomB04g14280.mRNA2 Steroid SQE medium pass
Bca_GomB04g14290.mRNA1 Steroid SQE medium pass
Bca_GomB04g14300.mRNA1 Steroid SQE medium pass
Bca_GomB04g22080.mRNA1 Steroid SQE low borderline
Bca_GomB04g34800.mRNA1 Steroid SQE medium pass
Bca_GomB05g11580.mRNA1 Steroid SQE medium pass
Bca_GomB06g83940.mRNA1 Steroid SQE medium pass
Bca_GomB06g84010.mRNA1 Steroid SQE medium pass
Bca_GomB07g37900.mRNA1 Steroid SQE low borderline
Bca_GomB07g38150.mRNA1 Steroid SQE medium pass
Bca_GomB07g38160.mRNA1 Steroid SQE medium pass
Bca_GomB07g60390.mRNA1 Steroid SQE low borderline
Bca_GomB08g94940.mRNA1 Steroid SQE low borderline
Bca_GomC01g03370.mRNA1 Steroid SQE medium pass
Bca_GomC01g03720.mRNA1 Steroid SQE medium pass
Bca_GomC01g03730.mRNA1 Steroid SQE medium pass
Bca_GomC03g06930.mRNA1 Steroid SQE medium pass
Bca_GomC03g06960.mRNA1 Steroid SQE medium pass
Bca_GomC03g06970.mRNA1 Steroid SQE medium pass
Bca_GomC04g39440.mRNA1 Steroid SQE medium pass
Bca_GomC07g43230.mRNA1 Steroid SQE medium pass
Bca_GomC07g43240.mRNA1 Steroid SQE medium pass
Bca_GomC08g15830.mRNA1 Steroid SQE low borderline
Bca_GomC08g51950.mRNA1 Steroid SQE medium pass
Bca_GomC08g68160.mRNA1 Steroid SQE medium pass
Bca_GomC08g68280.mRNA1 Steroid SQE medium pass
Bca_GomC09g10510.mRNA1 Steroid SQE medium pass