PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

6327
Candidate Protein Records
4874
Pathway-Level Records
12342
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Protein/Isoform Record Pathway Family Confidence Status
Bca_GomB02g19410.mRNA1 Alkaloid PMT low borderline
Bca_GomB02g39000.mRNA1 Alkaloid PMT medium pass
Bca_GomB03g26340.mRNA1 Alkaloid PMT medium borderline
Bca_GomB03g82920.mRNA1 Alkaloid PMT low borderline
Bca_GomB03g84310.mRNA1 Alkaloid PMT medium borderline
Bca_GomB05g02530.mRNA1 Alkaloid PMT low borderline
Bca_GomB05g03920.mRNA1 Alkaloid PMT medium borderline
Bca_GomB05g49510.mRNA1 Alkaloid PMT medium borderline
Bca_GomB05g56450.mRNA1 Alkaloid PMT low borderline
Bca_GomB05g56790.mRNA1 Alkaloid PMT low borderline
Bca_GomB05g60390.mRNA1 Alkaloid PMT medium pass
Bca_GomB06g27270.mRNA1 Alkaloid PMT low borderline
Bca_GomB06g45300.mRNA1 Alkaloid PMT medium pass
Bca_GomB07g62130.mRNA1 Alkaloid PMT low borderline
Bca_GomB08g62850.mRNA1 Alkaloid PMT medium pass
Bca_GomB08g63080.mRNA1 Alkaloid PMT medium pass
Bca_GomB08g77440.mRNA1 Alkaloid PMT low borderline
Bca_GomC02g12500.mRNA1 Alkaloid PMT medium pass
Bca_GomC02g61420.mRNA1 Alkaloid PMT low borderline
Bca_GomC05g27340.mRNA1 Alkaloid PMT medium borderline
Bca_GomC06g01590.mRNA1 Alkaloid PMT low borderline
Bca_GomC07g05580.mRNA1 Alkaloid PMT low borderline
Bca_GomC07g23680.mRNA1 Alkaloid PMT medium borderline
Bca_GomC07g23690.mRNA1 Alkaloid PMT medium borderline
Bca_GomC07g68400.mRNA1 Alkaloid PMT medium borderline
Bca_GomC08g14210.mRNA1 Alkaloid PMT low borderline
Bca_GomC08g31810.mRNA1 Alkaloid PMT low borderline
Bca_GomC08g44950.mRNA1 Alkaloid PMT low borderline
Bca_GomC08g49160.mRNA1 Alkaloid PMT low borderline
Bca_GomC08g66580.mRNA1 Alkaloid PMT medium borderline
Bca_GomC08g67010.mRNA1 Alkaloid PMT medium borderline
Bca_GomC09g34640.mRNA1 Alkaloid PMT medium borderline
Bca_GomC09g44550.mRNA1 Alkaloid PMT medium pass