PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
Bca_GomB01g08030.mRNA1 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomB01g08060.mRNA1 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomB01g54160.mRNA1 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Bca_GomB01g54330.mRNA1 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Bca_GomB01g54340.mRNA1 Flavonoid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Bca_GomB05g17800.mRNA1 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomB05g45730.mRNA1 Flavonoid PAL high pass PAL__00004__sp_P45725_PAL3_ARATH
Bca_GomB06g21110.mRNA1 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomB06g70740.mRNA1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomB06g71780.mRNA1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomB06g81160.mRNA1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomB06g81170.mRNA1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomB08g30180.mRNA1 Flavonoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomB08g30190.mRNA1 Flavonoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomB08g30200.mRNA1 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomB08g30780.mRNA1 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomB08g84200.mRNA1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomC04g11750.mRNA1 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomC04g37240.mRNA1 Flavonoid PAL low borderline PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomC04g37260.mRNA1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomC04g37440.mRNA1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomC04g37450.mRNA1 Flavonoid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomC04g58170.mRNA1 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomC05g00310.mRNA1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomC05g56520.mRNA1 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Bca_GomC06g25690.mRNA1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomC08g35130.mRNA1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomC08g35650.mRNA1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomC09g10190.mRNA1 Flavonoid PAL low borderline PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomB01g08030.mRNA1 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomB01g08060.mRNA1 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomB01g54160.mRNA1 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Bca_GomB01g54330.mRNA1 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Bca_GomB01g54340.mRNA1 Phenylpropanoid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Bca_GomB05g17800.mRNA1 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomB05g45730.mRNA1 Phenylpropanoid PAL high pass PAL__00004__sp_P45725_PAL3_ARATH
Bca_GomB06g21110.mRNA1 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomB06g70740.mRNA1 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomB06g71780.mRNA1 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomB06g81160.mRNA1 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomB06g81170.mRNA1 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomB08g30180.mRNA1 Phenylpropanoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomB08g30190.mRNA1 Phenylpropanoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomB08g30200.mRNA1 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomB08g30780.mRNA1 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomB08g84200.mRNA1 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomC04g11750.mRNA1 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Bca_GomC04g37240.mRNA1 Phenylpropanoid PAL low borderline PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomC04g37260.mRNA1 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Bca_GomC04g37440.mRNA1 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH