PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
Bca_GomB01g02810.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomB01g03100.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomB01g07030.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB01g15170.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomB01g52240.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB01g52680.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB01g55120.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB01g55130.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB01g55290.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB01g55310.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB01g65490.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB01g66050.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB02g34100.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB02g37330.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB02g37340.mRNA1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Bca_GomB02g37350.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomB02g47570.mRNA1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Bca_GomB02g47580.mRNA1 Phenylpropanoid LAC low borderline LAC__00003__sp_Q84J37_LAC15_ARATH
Bca_GomB02g48810.mRNA1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Bca_GomB02g48870.mRNA1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Bca_GomB02g49660.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomB02g51530.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomB02g54190.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB02g71480.mRNA1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Bca_GomB02g98500.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB02g98580.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB03g12060.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomB04g17570.mRNA1 Phenylpropanoid LAC low borderline LAC__00003__sp_Q84J37_LAC15_ARATH
Bca_GomB04g17680.mRNA1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Bca_GomB04g33400.mRNA1 Phenylpropanoid LAC low borderline LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomB05g06960.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB05g25550.mRNA1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB05g44900.mRNA1 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB05g44970.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB05g46360.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB05g46860.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB05g47440.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB05g47960.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB05g55270.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomB05g57040.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomB05g58860.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB05g58870.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB05g73880.mRNA1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB05g73890.mRNA1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB05g84810.mRNA1 Phenylpropanoid LAC low borderline LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomB06g01100.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB06g01150.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB06g10600.mRNA1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB06g17470.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB06g17590.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH