PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HMGR
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Gene Pathway Family Confidence Status
Bca_GomB01g29720.mRNA1 Terpenoid HMGR medium pass
Bca_GomB01g48280.mRNA1 Terpenoid HMGR medium pass
Bca_GomB01g72540.mRNA1 Terpenoid HMGR medium pass
Bca_GomB02g26110.mRNA1 Terpenoid HMGR medium pass
Bca_GomB03g69210.mRNA1 Terpenoid HMGR medium pass
Bca_GomB03g78720.mRNA1 Terpenoid HMGR medium pass
Bca_GomB03g92960.mRNA1 Terpenoid HMGR medium pass
Bca_GomB05g05100.mRNA1 Terpenoid HMGR low borderline
Bca_GomB05g85510.mRNA1 Terpenoid HMGR medium pass
Bca_GomB06g43970.mRNA1 Terpenoid HMGR medium pass
Bca_GomC01g04680.mRNA1 Terpenoid HMGR medium pass
Bca_GomC01g12610.mRNA1 Terpenoid HMGR medium pass
Bca_GomC02g19650.mRNA1 Terpenoid HMGR medium pass
Bca_GomC02g25460.mRNA1 Terpenoid HMGR medium pass
Bca_GomC02g33410.mRNA1 Terpenoid HMGR medium pass
Bca_GomC02g42780.mRNA1 Terpenoid HMGR medium pass
Bca_GomC03g00310.mRNA1 Terpenoid HMGR low borderline
Bca_GomC03g57360.mRNA1 Terpenoid HMGR medium pass
Bca_GomC03g73730.mRNA1 Terpenoid HMGR medium pass
Bca_GomC03g76740.mRNA1 Terpenoid HMGR medium pass
Bca_GomC03g95380.mRNA1 Terpenoid HMGR medium pass
Bca_GomC04g23710.mRNA1 Terpenoid HMGR low borderline
Bca_GomC04g53000.mRNA1 Terpenoid HMGR medium pass
Bca_GomC05g29580.mRNA1 Terpenoid HMGR low borderline
Bca_GomC06g31560.mRNA1 Terpenoid HMGR medium pass
Bca_GomC06g54890.mRNA1 Terpenoid HMGR medium pass
Bca_GomC07g08270.mRNA1 Terpenoid HMGR medium pass
Bca_GomC07g08280.mRNA1 Terpenoid HMGR medium pass
Bca_GomC07g08290.mRNA1 Terpenoid HMGR medium pass
Bca_GomC07g68410.mRNA1 Terpenoid HMGR medium pass
Bca_GomC08g03890.mRNA1 Terpenoid HMGR low borderline
Bca_GomC08g08080.mRNA1 Terpenoid HMGR medium pass
Bca_GomC08g16120.mRNA1 Terpenoid HMGR medium pass
Bca_GomC08g33700.mRNA1 Terpenoid HMGR medium pass
Bca_GomC09g13940.mRNA1 Terpenoid HMGR medium pass
Bca_GomC09g18240.mRNA1 Terpenoid HMGR medium pass