PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Bca_GomB01g08210.mRNA1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Bca_GomB01g08240.mRNA1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Bca_GomB01g12080.mRNA1 Alkaloid NMT medium pass NMT__00019__sp_O22781_SUVH2_ARATH
Bca_GomB01g14160.mRNA1 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
Bca_GomB01g21290.mRNA1 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Bca_GomB01g21600.mRNA1 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Bca_GomB01g21890.mRNA1 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Bca_GomB01g22270.mRNA1 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Bca_GomB01g23020.mRNA1 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Bca_GomB01g37100.mRNA1 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Bca_GomB01g37200.mRNA1 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Bca_GomB01g37240.mRNA1 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Bca_GomB01g39700.mRNA1 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
Bca_GomB01g41610.mRNA1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Bca_GomB01g41870.mRNA1 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Bca_GomB01g45850.mRNA1 Alkaloid NMT medium borderline NMT__00057__sp_Q9FR44_PEAM1_ARATH
Bca_GomB01g47670.mRNA1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Bca_GomB01g48010.mRNA1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Bca_GomB01g50940.mRNA1 Alkaloid NMT medium pass NMT__00023__sp_O82210_ANM12_ARATH
Bca_GomB01g51590.mRNA1 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Bca_GomB01g52530.mRNA1 Alkaloid NMT medium borderline NMT__00038__sp_Q84PP7_MXMT2_COFAR
Bca_GomB01g56840.mRNA1 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Bca_GomB01g59550.mRNA1 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Bca_GomB01g63470.mRNA1 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Bca_GomB01g68000.mRNA1 Alkaloid NMT medium borderline NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
Bca_GomB01g71270.mRNA1 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Bca_GomB01g71490.mRNA2 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Bca_GomB02g05110.mRNA1 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Bca_GomB02g09080.mRNA1 Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH
Bca_GomB02g19670.mRNA1 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Bca_GomB02g26930.mRNA2 Alkaloid NMT medium borderline NMT__00029__sp_Q42963_PMT1_TOBAC
Bca_GomB02g27310.mRNA1 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Bca_GomB02g28030.mRNA1 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Bca_GomB02g28690.mRNA1 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Bca_GomB02g28700.mRNA2 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Bca_GomB02g30400.mRNA1 Alkaloid NMT medium pass NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Bca_GomB02g44920.mRNA1 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Bca_GomB02g47310.mRNA2 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Bca_GomB02g51880.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB02g51890.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB02g57470.mRNA1 Alkaloid NMT medium pass NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Bca_GomB02g60000.mRNA1 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Bca_GomB02g60060.mRNA1 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Bca_GomB02g60300.mRNA1 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Bca_GomB02g60550.mRNA1 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Bca_GomB02g60770.mRNA1 Alkaloid NMT low borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
Bca_GomB02g63130.mRNA1 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Bca_GomB02g63140.mRNA1 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Bca_GomB02g72220.mRNA1 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Bca_GomB02g74560.mRNA2 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH