PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SQS/FDFT1
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Gene Pathway Family Confidence Status
Bca_GomB02g102550.mRNA1 Steroid SQS/FDFT1 high pass
Bca_GomB02g102560.mRNA1 Steroid SQS/FDFT1 high pass
Bca_GomB02g41150.mRNA1 Steroid SQS/FDFT1 medium pass
Bca_GomB02g95770.mRNA2 Steroid SQS/FDFT1 high pass
Bca_GomB02g95780.mRNA1 Steroid SQS/FDFT1 high pass
Bca_GomB02g96830.mRNA1 Steroid SQS/FDFT1 high pass
Bca_GomB02g96840.mRNA1 Steroid SQS/FDFT1 high pass
Bca_GomB03g28570.mRNA1 Steroid SQS/FDFT1 high pass
Bca_GomB04g37640.mRNA1 Steroid SQS/FDFT1 low borderline
Bca_GomB05g14620.mRNA1 Steroid SQS/FDFT1 high pass
Bca_GomB05g14630.mRNA1 Steroid SQS/FDFT1 high pass
Bca_GomB05g36840.mRNA1 Steroid SQS/FDFT1 medium pass
Bca_GomB06g78430.mRNA1 Steroid SQS/FDFT1 high pass
Bca_GomB06g78440.mRNA1 Steroid SQS/FDFT1 high pass
Bca_GomB07g48480.mRNA1 Steroid SQS/FDFT1 high pass
Bca_GomB07g56280.mRNA1 Steroid SQS/FDFT1 high pass
Bca_GomB08g13350.mRNA1 Steroid SQS/FDFT1 medium pass
Bca_GomB08g33630.mRNA1 Steroid SQS/FDFT1 high pass
Bca_GomC01g07570.mRNA1 Steroid SQS/FDFT1 high pass
Bca_GomC01g07580.mRNA1 Steroid SQS/FDFT1 high pass
Bca_GomC01g56630.mRNA1 Steroid SQS/FDFT1 high pass
Bca_GomC02g10560.mRNA1 Steroid SQS/FDFT1 medium pass
Bca_GomC03g14750.mRNA1 Steroid SQS/FDFT1 medium pass
Bca_GomC05g00050.mRNA1 Steroid SQS/FDFT1 low borderline
Bca_GomC09g17950.mRNA1 Steroid SQS/FDFT1 low borderline
Bca_GomC09g47510.mRNA1 Steroid SQS/FDFT1 medium pass