PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
Bca_GomB01g42860.mRNA1 Alkaloid GS high pass
Bca_GomB01g47580.mRNA1 Alkaloid GS low borderline
Bca_GomB01g47640.mRNA1 Alkaloid GS low borderline
Bca_GomB02g102300.mRNA1 Alkaloid GS high pass
Bca_GomB02g17230.mRNA1 Alkaloid GS high pass
Bca_GomB02g95570.mRNA1 Alkaloid GS high pass
Bca_GomB02g98900.mRNA1 Alkaloid GS high pass
Bca_GomB03g63790.mRNA1 Alkaloid GS high pass
Bca_GomB03g64370.mRNA1 Alkaloid GS high pass
Bca_GomB03g84260.mRNA1 Alkaloid GS low borderline
Bca_GomB04g73930.mRNA1 Alkaloid GS medium pass
Bca_GomB05g03980.mRNA1 Alkaloid GS low borderline
Bca_GomB05g11420.mRNA1 Alkaloid GS high pass
Bca_GomB05g11430.mRNA1 Alkaloid GS high pass
Bca_GomB05g30130.mRNA1 Alkaloid GS low borderline
Bca_GomB05g74440.mRNA1 Alkaloid GS low borderline
Bca_GomB06g22710.mRNA1 Alkaloid GS low borderline
Bca_GomB06g27330.mRNA1 Alkaloid GS medium pass
Bca_GomB06g69280.mRNA1 Alkaloid GS low borderline
Bca_GomB07g12270.mRNA1 Alkaloid GS low borderline
Bca_GomB07g12320.mRNA1 Alkaloid GS low borderline
Bca_GomB07g12340.mRNA1 Alkaloid GS low borderline
Bca_GomB07g34330.mRNA1 Alkaloid GS low borderline
Bca_GomB07g36560.mRNA1 Alkaloid GS low borderline
Bca_GomB07g51850.mRNA1 Alkaloid GS low borderline
Bca_GomB08g16420.mRNA1 Alkaloid GS low borderline
Bca_GomC01g01660.mRNA1 Alkaloid GS high pass
Bca_GomC01g01670.mRNA1 Alkaloid GS high pass
Bca_GomC01g01810.mRNA1 Alkaloid GS high pass
Bca_GomC01g03170.mRNA1 Alkaloid GS high pass
Bca_GomC01g03180.mRNA1 Alkaloid GS high pass
Bca_GomC01g05620.mRNA1 Alkaloid GS low borderline
Bca_GomC01g07960.mRNA1 Alkaloid GS high pass
Bca_GomC01g34260.mRNA1 Alkaloid GS low borderline
Bca_GomC03g50800.mRNA1 Alkaloid GS low borderline
Bca_GomC03g81600.mRNA1 Alkaloid GS high pass
Bca_GomC03g81610.mRNA1 Alkaloid GS low borderline
Bca_GomC03g81620.mRNA1 Alkaloid GS high pass
Bca_GomC04g33470.mRNA1 Alkaloid GS medium pass
Bca_GomC04g35560.mRNA1 Alkaloid GS low borderline
Bca_GomC05g27300.mRNA1 Alkaloid GS low borderline
Bca_GomC05g46110.mRNA1 Alkaloid GS high pass
Bca_GomC05g50510.mRNA1 Alkaloid GS low borderline
Bca_GomC06g01530.mRNA1 Alkaloid GS medium pass
Bca_GomC06g13650.mRNA1 Alkaloid GS medium pass
Bca_GomC06g28110.mRNA1 Alkaloid GS low borderline
Bca_GomC06g50400.mRNA1 Alkaloid GS high pass
Bca_GomC07g05500.mRNA1 Alkaloid GS medium pass
Bca_GomC07g62210.mRNA1 Alkaloid GS high pass
Bca_GomC07g63090.mRNA1 Alkaloid GS high pass