PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 8HGO
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Gene Pathway Family Confidence Status
Bca_GomB02g17130.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB02g59960.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB02g60030.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB02g60260.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB02g61480.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB02g61800.mRNA1 Alkaloid 8HGO medium pass
Bca_GomB03g26790.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB03g27410.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB03g27450.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB03g27580.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB03g40220.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB03g45640.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB03g65110.mRNA2 Alkaloid 8HGO medium borderline
Bca_GomB03g70010.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB03g86520.mRNA1 Alkaloid 8HGO low borderline
Bca_GomB03g96320.mRNA1 Alkaloid 8HGO low borderline
Bca_GomB03g96330.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB03g96580.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB04g02240.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB04g14530.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB04g32620.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB05g00020.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB05g05150.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB05g08570.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB05g29620.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB05g65700.mRNA1 Alkaloid 8HGO medium pass
Bca_GomB06g18150.mRNA1 Alkaloid 8HGO low borderline
Bca_GomB06g63410.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomB06g79580.mRNA1 Alkaloid 8HGO low borderline
Bca_GomB07g16060.mRNA1 Alkaloid 8HGO low borderline
Bca_GomB08g33490.mRNA1 Alkaloid 8HGO low borderline
Bca_GomB08g33830.mRNA1 Alkaloid 8HGO low borderline
Bca_GomB08g86480.mRNA1 Alkaloid 8HGO low borderline
Bca_GomC01g20070.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomC01g20080.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomC02g56730.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomC02g60290.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomC03g31120.mRNA1 Alkaloid 8HGO low borderline
Bca_GomC04g08740.mRNA1 Alkaloid 8HGO low borderline
Bca_GomC04g34490.mRNA1 Alkaloid 8HGO low borderline
Bca_GomC05g22760.mRNA1 Alkaloid 8HGO low borderline
Bca_GomC05g26060.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomC05g36350.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomC05g39480.mRNA1 Alkaloid 8HGO medium pass
Bca_GomC05g47210.mRNA1 Alkaloid 8HGO low borderline
Bca_GomC06g35780.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomC06g55380.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomC07g24600.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomC07g29220.mRNA1 Alkaloid 8HGO medium borderline
Bca_GomC08g37900.mRNA1 Alkaloid 8HGO low borderline