PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.48% Alkaloid pathway 22.81% Phenylpropanoid pathway 21.11% Flavonoid pathway 10.69% Rosmarinic acid pathway 8.78% Steroid pathway 7.12%
Family Distribution
BAHD 6.45% C3'H/CYP98A 6.11% C4H 6.07% POD 4.08% 4CL 4.04% CYP76 3.92% IFS 3.77% F3H 3.13%
Other Families 62.45%
More Families (98)
T3O 379 3.07% UGT 355 2.88% NMT 328 2.66% DWF4/CYP90B1 322 2.61% 7DLGT 318 2.58% UFGT 318 2.58% CODM/T6ODM 249 2.02% BR6OX2/CYP85A2 231 1.87% SGD 222 1.8% STR 219 1.77% F3'H/CYP75B 213 1.73% SMT1/SMT2/SMT3 200 1.62% H6H 193 1.56% CYP71 180 1.46% TRI/TRII 171 1.39% CSE 147 1.19% PYKS 136 1.1% CAD 121 0.98% CAS 118 0.96% T16H 112 0.91% SLS 111 0.9% LAC 109 0.88% FNS 107 0.87% BBE 106 0.86% COMT 106 0.86% IFR 105 0.85% IO 99 0.8% TPS 98 0.79% CYP90D1 96 0.78% RAS 95 0.77% ANR 89 0.72% GES 87 0.7% PAL 87 0.7% TAT 83 0.67% LAMT 79 0.64% G8O/G8H 78 0.63% F3'5'H/CYP75A 72 0.58% 16OMT 68 0.55% F5H/CYP84A 67 0.54% GS 66 0.53% HCT 65 0.53% CCR 60 0.49% CPD/CYP90A1 56 0.45% 8HGO 54 0.44% 7DLH 52 0.42% ANS/LDOX 52 0.42% CYP51G1 52 0.42% CPR 48 0.39% COR 47 0.38% BR6OX1/CYP85A1 47 0.38% GGPPS 41 0.33% NCS 40 0.32% CHS 38 0.31% SQE 37 0.3% HMGR 36 0.29% PMT 33 0.27% FPPS 33 0.27% CCoAOMT 30 0.24% SQS/FDFT1 26 0.21% AACT 26 0.21% MPO 25 0.2% ROT3/CYP90C1 24 0.19% MVD 24 0.19% CYP80B1 23 0.19% CNMT 22 0.18% SMO1/SMO2 22 0.18% DFR 20 0.16% DWF7 20 0.16% MVK 20 0.16% ISY 18 0.15% TYDC_DDC 18 0.15% XMT_MXMT_DXMT 17 0.14% FLS 17 0.14% CYP80F1 16 0.13% HPPR 16 0.13% ADC 13 0.11% DWF1 13 0.11% DXS 13 0.11% TDC 12 0.1% HYD1 12 0.1% IDI 12 0.1% PMK 12 0.1% CHI 11 0.09% DET2 11 0.09% MCT/IspD 11 0.09% CYP719 8 0.06% 6OMT_4OMT_SOMT 8 0.06% HDR/IspH 8 0.06% DWF5 7 0.06% HDS/IspG 7 0.06% CPI1 6 0.05% FK 6 0.05% HMGS 5 0.04% DXR 5 0.04% GPPS 4 0.03% MDS/IspF 4 0.03% CMK/IspE 3 0.02% ODC 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
Bca_GomB02g15680.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bca_GomB03g82710.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bca_GomB03g82720.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bca_GomB03g82730.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bca_GomB03g83330.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Bca_GomB04g06780.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bca_GomB04g06830.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bca_GomB04g06850.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bca_GomB04g41060.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bca_GomB04g41140.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bca_GomB04g41150.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bca_GomB05g21210.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bca_GomC01g14490.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bca_GomC01g14500.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bca_GomC01g14540.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bca_GomC02g61220.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bca_GomC02g61230.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bca_GomC08g51990.mRNA1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH