PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPD/CYP90A1
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Gene Pathway Family Confidence Status
Bca_GomB01g53780.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomB01g67390.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB02g67790.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomB02g98860.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB02g99510.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB03g08910.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB03g11910.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB03g12420.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB03g53080.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomB03g65140.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB04g20560.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomB04g20610.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomB04g25840.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomB04g26000.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomB04g34380.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomB04g49310.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB05g11940.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB05g12230.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB05g44010.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB06g24070.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB06g32080.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomB06g32550.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomB06g38380.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB06g38410.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB06g70720.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomB06g70810.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomB06g71760.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomB06g74040.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomB07g03880.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB07g19260.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB07g30350.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB07g34520.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB07g64530.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomB08g03390.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomB08g77290.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomC02g05410.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomC02g44220.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomC02g47580.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomC02g49900.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomC03g74980.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomC04g24170.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomC05g20260.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomC06g01880.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomC06g25610.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomC06g25740.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomC07g35780.mRNA1 Steroid CPD/CYP90A1 medium borderline
Bca_GomC07g37070.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomC07g37090.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomC07g37230.mRNA1 Steroid CPD/CYP90A1 low borderline
Bca_GomC07g63860.mRNA1 Steroid CPD/CYP90A1 medium borderline